RNA id: TCONS_00006215


Basic Information

Item Value
RNA id TCONS_00006215
length 1646
RNA type nonsense_mediated_decay
GC content 0.47
exon number 11
gene id XLOC_003150
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2633743 ~ 2649496 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGATCCTGCTTCGGTGAAAATGGCCCACTATCTGGACGATTTTATTGCAGATTtcaaaaaacaaatgctacaGAGAACGAACAGGAGCTGGAGAATCTGCTCATCAGCAACGCTAAACTGCGAGAAGAAGTAAAGAACAACCCTGAAGAAAAGGAGCGTCGTGAGTACTACAGGAGGAAACTTTGGATTAACGACGTCTATGACACATGTATAAGTGCGGCAGGAATGCCAGCGAACACACGGGACCCTCTGGAGCAGTTACAAATGTGTACGAGTTTTGTTCAAGTTTTCTGATACTTCGTATATTTATGGAtcaaaaaatacaatttcaaCAGCCAAATCCCGTGACATGTGATGCTGAAGACATGTACAAATACCCGCAAAAACCACCACCTCATAGGATGCCCAAAGGCACGCTGGACAGTGTCATGGGTGTAGTGGAGAGAAGCGCAGTTTTCACCCGTCAGAGGGACATCAGGCTGCCACCAATCCCTGGCATTAGTCATCATCTTGGGCCACCACCCGAGGTCCACCCCAGCCTCGATGCCCAGACACAGACTGACATTTATAAACGAATGAGAAGAACCATTAGAGCCACCTTATCAGATAAAGCAAAGAAAATTTTACAAAGTCGCTGTGAACAGCAGAAAAAGAGCAGCATGGGTGTGAGAAAGAAAGCCACGGTCTCCAGCCGACCAAAGACTGTCAAGCTTCCACCTAGCTCTGCTCCACCAGTCTCTGTTCCACCTGAACCTGTCCCACTTACCCCTGTCCCACCTGGCCCTTCCACAGCTACAGGACTGCCTCCACATCCAGCAGCTCAGATGAGCGAGACTGCGGTGGACCGAAGCCTCGACACTGGGAAAGACCTTCCAGTCGTCGAGTCCTCGAAGAAAAAGAGAAACAGACCCCCAAAAGCCTCAAGGAGAGATGAAGACATGGGATTTGAATTGATGGTCATTTCTGAGATGTGGTGGGAAATCGCAGACGAAATCAGGGAAATTGAGGCTAAAAAGGAAAACATCGTGAAGAAGGCAAACTGCTTGGAAAAAAGGTTTCATGCCAGTGTTCGCCTCATAGCAGAACAGCAGGAGGAAGAAAGGGATCTTAAGCAAATATGGCAGAGTAAAAACAGCGGTTGCCAGATACCTGTTTGGAGGATGAAAAATGAGCAGGTGGCGGAGGCCATCGCAGAGATCCACGAAAGCTTCGGTGAGATCAGCTGTCCGTCTATTCCGTATATAATGCAAGAAGACATTGATCAGTGGTGTTCAGACGCCAGCAGGTTCGTTAGAAACACAAGGCTCCAAAAGACAATACAGAGTGGCTTTCACCACATCGAGTACAGTAAAAGGCAGCAGAAAAACGCTGAGAGGCAAGCCCGGCGGAGGCAGATCCGACATGAGATCGCTCTCGCTCCTCCTGTAAAAATAACTGGAAGAAAGCTGATCCCACGCAGCCAGCCTCCGAAGGTTGTGGAGAAAGTAGTGAAGGTTAAGGAAGAGAagaatttactgtattttttaaacaattaaccGGACTGAATTCTCACGTATTGAAGAAGAAAATGCCTCCGTCTTTCAGTGAAGAATGAGGaaatcctcctcctcttccttcaCTGAACGACCAACTTCCAAAATCCGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-42 No description available

Ensembl:

ensembl_id ENSDART00000173294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006213 lncRNA upstream 17768 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008515 lncRNA upstream 313436 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 313436 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 319005 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 320646 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00006224 lncRNA downstream 61163 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 178159 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 280785 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 554093 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 681719 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006212 mRNA upstream 23967 2600612 ~ 2609824 (+) True XLOC_003148
TCONS_00006211 mRNA upstream 24280 2596667 ~ 2609511 (+) False XLOC_003148
TCONS_00006210 mRNA upstream 67099 2554856 ~ 2566692 (+) True XLOC_003147
TCONS_00006209 mRNA upstream 120698 2506516 ~ 2513093 (+) False XLOC_003146
TCONS_00006208 mRNA upstream 120698 2506516 ~ 2513093 (+) True XLOC_003146
TCONS_00006217 mRNA downstream 270 2649664 ~ 2684595 (+) False XLOC_003151
TCONS_00006218 mRNA downstream 497 2649891 ~ 2683979 (+) True XLOC_003151
TCONS_00006219 mRNA downstream 35718 2685112 ~ 2690933 (+) False XLOC_003152
TCONS_00006220 mRNA downstream 38001 2687395 ~ 2688454 (+) True XLOC_003152
TCONS_00006221 mRNA downstream 50557 2699951 ~ 2707028 (+) True XLOC_003153
TCONS_00006199 other upstream 443061 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1087560 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1104464 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1902868 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 2262351 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006226 other downstream 95670 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 527292 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 849796 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1316333 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2832359 5481753 ~ 5481884 (+) True XLOC_003176

Expression Profile

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