RNA id: TCONS_00006218


Basic Information

Item Value
RNA id TCONS_00006218
length 7152
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_003151
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2649664 ~ 2684595 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCGCTGCATGTTACACAACGTGTTAAGCAGTCTGCGCATGCGCACTTCGAGCCCGTGGACAGGAAGCCTGACCGAAGCAGCTGATAACCAGGCTTCGGATGTTCCGGGGAGCACGAAACAACGGTATTTTAATCAGGGATTTTTAATTCGAGGACATAAGTCGGCGATTTTATGAGGAGTGTGCCTGGACACCCTTCAGAGCCACCGATGGAGCTGTATTTTTATACAGATCGCTGTTTATTGTCGAGTTAACTGCAGGGCCGGAGCAGCTCAGTAACAATGAAGGCCTAGAATCCAGATCTGAGGGGTTTAAAGCTCTCCTCTAACCTCATACACCCGGATTATCAACACGCTCAGGCATGGCTTCACAGCTGCAGGTTTTCTCCCCTCCGTCGGTGTCTTCCAGTGCCTTCTGCAGGGTGAAAAAAATGAAAGTGGAGAGCTGTGCTTGGGATGCCTCCAACGAAGCGTACAGTTCTGTGGGCCAGTACAGCTTCAACCCTGCAGCGGGGCTGTCTTTCGGCACCTCCGGCCTCGTCTTCCCCCCAGGGTCCCGAGGTCAGGTGGTGGTCCGGGCGGCAGACAGCACCGGGAGCCTCCAGCGTGGGTCCAGTCGCAGAACATCTCACAATAACACCCACCACTCGGAGTCCCACTCGTCTCGCGGGCACAGGTATGGCGTGAAGAGAAAGAATGAGGAAGTGGAGAGCTCTGGCGGAGGCGGGAGCGGAAGTAGCAGCGTTCAGATTCTGGAAGAACTCTCGGCTCCGGCTTTCTCCACACAGACGGGAGGAGCAGGAACCACCGGCCAGTCCATTCCCCACTCGGCCCCTACTACCAAAAGCAGCAGTTCCAATGGGGAAGGAGACTACCAGCTGGTCCAGCACGAGATTCTCTGCTCCGTCTCCAACAGCTACGAAGTTCTGGAGTTTTTGGGTCGAGGCACGTTTGGGCAGGTGGCCAAGTGCTGGAAAAGAGGAACTAATGAGATCGTGGCCATCAAAATCCTGAAGAATCATCCATCGTACGCACGTCAGGGACAGATTGAGGTGAGCATATTGAACCGTCTGAGTGCGGAGAATGCGGACGAGTTCAACTTTGTGCGCTCTTATGAGTGTTTCCAGCATAAGGGCCACACGTGCTTGGTGTTTGAGATGCTGGAGCAGAACCTGTACGACTTCTTGAAGCACAGTAAGTTCAGTCCACTGCCACTACGCCACATCCGGCCCATCCTGCAGCAGGTCGCCACAGCCCTGATGAAGCTGAAATGTTTGGGTCTCATCCACGCCGATCTGAAGCCTGAGAACATCATGCTGGTGGACCCCATCAGACAGCCATATAGGGTCAAAGTTATCGACTTCGGATCGGCCAGTCATGTCTCTAAAGCTGTGTGCTCCACTTACCTCCAGTCTCGCTACTACAGAGCCCCTGAGATCATCCTAGGTCTGCCGTTTTGTGAAGCCATTGACATGTGGTCGCTGGGCTGTGTGATTGCAGAGCTCTTTCTGGGCTGGCCGCTTTATCCAGGAGCTTCAGAATATGACCAGATTCGGTACATTTCTCAAACACAGGGTTTGCCTCCGGAGTATCTCTTGAGTGCCGGCACAAAGACGAGCCGCTTCTTCAACAGAGGGCCGGACTCCAGCTATCCGTTGTGGAGGTTAAAAacccCATCTGAGCATGAATCCGAAATGGGTATCAAGTCCAAAGAAGCGAGAAAATACATCTTTAATTGTTTGGATGACATGATGCAGGTCAATCTGCCGAATCATTTAGAAGGGACGGACCTGTTGGCGGAGAAGGCGGACCGACGGGAGCTGATTGACCTGCTGAAGAGGATGCTGAGGCTGGACGCCGATAAAAGAATCACACCCACAAAGACACTGGCACATCCGTTTGTGACCATGAGCCACCTGCTGAACTTCCCACACAGCTCACATGTTAAGTCGTGCTTCCAGAACATGGATATCTGCAAGAGAAGAAACAATAGCTTTGACAGTGGGAAGGCCCTGTTTGCTGCTAATACTGTTCCTGGAACTGCAGGAAACCTAACTGTGACCTTCAGCAGCCAGCTTAACCAGCACAGTCAGGTTCCCTCTGCTGGTGGAGCTGTTCCTCTCCTCAACTACCAGCCGGCTCTTTACCAGCAGGCCACCATAAACATCCCAGGCCTGGCTCAGCCCAGCATCCCCCTGCAGACCCGCTCCACCCAGCTGTGTGCTCAGACCGAACCCTTCCAGCAAACCCTCATCGTCTGCCCACCCACCACTATACAAGGGCTTCCATCCTCTAATAAAACCTCTAGCTATCCTGTCAGGATGGAGAACGGCGTTCCTGTTGTCCAGCAAAACCAGTCCTCGCAACCCCTGCAGCTTCAACCCAGCATGCTGACACAGCAGGCCTGGCCAGCGGGCACCCAGCAGATCCTCATACCCTCGGCGTGGCAGCAGGTGCCTGGCATGACCATCCACAACTCCAGCCACCAGCCTGTTGTGAACCAATCTCCTCTGCAGGCCCTGCTGTCTGAGAACTCCACACAGCAAACATCCAGCTGGAGGGCATCTCAGAGTGGTCAGCACAATGGTGTCGTCCAGCAGAACCCACATATCCTCAGCGGCCTCAATCCCACTCATTCCCTCAATAGAGGAGCGACTACAGCTACTCGCTCGCAGAACAAGAGGAGCCGCATCTGCTGCGACACCAGCAGCAGCAGTGCTCTGGTGGCTTCCCATTCTTACAGCGCTCTTCTGActcagccaatcatcatctccGACACCCCGAGTCCTGCAGTCAGCGTCATCACCATACACAGCGACTCTGAAGACGAGGATGAGCGCAAGTTTCACCCCGCCAGCTGCGGCCCCAGCCATAGGACGAATGTGATCAGCTGTCTGACCGTTCACGATTCGGACTCCTCCACCGCCAGTCCTTTAACCCCCAAACCCCAGAACGGTCACATCGGGCTCCAGTCCTCACGACTGGCCAAATCTCTGGCAGTGGTGGCGCCGACTGTCAAAACACAGCCTGTGGAGAGCTCCATATCGGCCAAAATCCCACCGGCTCTAGGTCTTCCCCAGAATTACTACATGAAGCCGAAGAGAGCTGCAGCTACAAGACATCAGAGCAGCTCAGGAGGAAGCATCAGTGAGCACCAACAGGAGCCCAGCAGATCTCAACCACTAAACCTCAGTCAGACCACTGTCTCCTCGTCTCAAGCACCACCGCCCGGGGTCATCCCATCATCCTCATCTTTGCGCCGCCAGCACACGTACCCGCCGGCCTCGTCCCATTACTGCCTGCAGGAGGCGCCGTCGTTCACCAGCACCCCCAGTCtatacacctaccccaacccggCCTCCCACATGGAGCACCTCCTCGTCCAGGGCTCCTCCCCCTCCATCCATGCCCCGCCCACCACTCACTATGCAGCCAGTCTAATCCCAAAGGACAGCATTGGGGGTGTGGTCCACGGAATCTCCGCCCACTACCAGCAACATTACCCCGCCCACCCTTACACCAGCACCACTAGAGAGAGCGGTGGGGGCGGGGCTTATAGCGGATATCAGCTCAGCCCCCGTAGGGTCCCGCAATACCCCTATATTTGAGACatatttacaaacaaaacaacCCACCGACCAATCAGCTGCTGGTTTTTATCTgtcatatttatgtttttagaGCCTTGTCAATTAATATTGTGCATCTTAGCTGAGATCGTTTTCTTAGCCCTGACATGTTCGTTTTAATTCGTAAGCAATAGAGGAATCATGCTGACATAGAGGATCGATCTAGTAATCCAGACTAAACTCCTTACACTAATCCTTCCTTATTTTAAACTCTCTTTTTAAATTCCGTGTCGTGTTTTTCGTTTGTCGTCGTCGTAGGATATCTTCTGCTTTTTAAGTTAAGTTTTAATCGTGAAGCTGACTGGTTTTTCAACCACTGTACCGGGAGGAGGTGTTGACGGAAATGAGGGAGGGAAAAAAATGTATCATGTACCCTAATCGTATTGTTATTTAAGTTAGCGCGCTACATGTTAGTCGAATCTAAGTCCTGGTAGAGTCGTAGAGTGTATGTTGTGAGGAATATCAGTGGATATAAGGAGTAACTTTTAACCCTTTATTTTTCCTTAAGAAATTGTTTAATCATGTCAATGCTCTCGAGTTCTCCAAGGAGAAGCGAGGTTAGGTTATTAACTTTTAAGAGGTAGATGAGAATCTGACGCTACATTGGAACCTATGATAATAACACACAGATGATTCATTTTTCTgacattaaaggggtagttcacacacaaaaaattaaaaattacagtttttatttaccCTCAAGAGGTATTAAACTTGAGTTTCcagtgttgaacacaaaataagatattttgaagaatgttggaaacctgtaacttcCATAATATCTGGTTTTATTATTCTATAAAACTCGATAAACCTCAAAGTGGAATTAAACTTTCAAGTTTCTTTTATCTGATGAGcgctaaagaagatattttaaagaatgttggaaaccggtaaccattgacttccatagtatgtattttttttctttggaagTCAGTGAACCTCAAGTGGAACCAAACTTTTTAAATTTCCTTTATCTGCtgagcacaaaataagatattttgaagaatgttgttagaaaccggtaaccattgacttccataaagtTTTTTCTTTTCCTTCTATAGAAGTCATTGAACCTCATGTGGAACCAACCAATcaagtttattttatatgttgaacaaaataatatgtttttaagaatgttggaaatctgtaactacTAACTTTCGTAACTTttataaaatctgttttttttttcttcttcttttgaaGTCAAGGAACCTAAAGTGAAACGAAACATTGAAGTTTTCTTTATCagttaagcacaaaagaagatattttgaacaatgttggaaaccagtaaccactgactaTAGTAATATCTGGATTttttctatggaagtcagtgaaCCTCAAGTTGAATCAAACTttcgagttttttttttatctgttgaacacaaaataatgttttgaagattgttgaaaactggtaaccattgacttccatgtttttttcctatgaaagtcaatggttacaggttttcagctttcttcaaaatatgttcttttgtgttcaacaaaataaagaaactcaaatctGGAATGACTTGAGGTTCATTGCTGAAATACAAATACTCTGGATGTCACTGGTTACcggttactaacattcttcaaaatatctttttttgtgtttaacagaataaagacatTAGAACGTTTTGTACAActtcattgacttctatagttaaagaaaacaaatattatggaggtcaatagttacaggttttcagcattcttcaaattatcttttgtgttcaacagaataaataaacttgaacgtTTGGAATCTCTTCAggttcattgacttccatagtatgtttttttttctactatggaagtcagtggttacagttttccaacattttatcaaaatatcttcttttgtggtcaactgaataaagaaacacaaacatTTAGAACCACTTGTGGTTCATTGACATCcgtaataagaaaaacaaatactatgaaggtcaatagttaccggtttctagcattcttcaaaatatcttttgtgttcaactgaaaaaaagagGCTTTGCTTTTTGTTGGCAAAGCTTGGAACCAACTGAgctacattgacttccatagtagaaaacagATTATAAGGAAGTAaatagttaccggtttccaacattcttcaaattatcttttgtTTCCAGCAGTATAAAGAAACTTATAAGTCTGGAACGACATGATattcattaacttccatagtagaaaacaaatactatagaggtcaatggttacaggtgttcaacattcttcaaattatcttcttttgtgttcaacagaataaagacatTTAAACGTTTAGAACCATTTTGGGTTCGTTGACTTCATagtggaaaaaaaacaatatggaagtcagtggttacaggtttccaacatttttcaaaatatcttcttttgtggtcaacCAAATAAAGAAACTTGAACATTTTGAACCCCTTGAggttcattgacttccatagtaagaaaaacaaatactatgaaggtCAATGGTGACCGgtttctagcattcttcaaaatattttttgcattcaactgaaaaaaagagGCTTTGCTTTTTGTTGGCAAATCTTGGAACCAACTGAGctacattgactttcatagtagaaaaaaaagatATGGAAGTGAATAGTTaccgatttccaacattcttcaaaatatcttatgcgttcaacaaaataaagaaactcaaaagttTGGAACGACTTAATGTTTATTGACTTCCacaacagaaaaaacaaatactatggaggtcaatggttacaggtctccaacattcttcaaaatatcttctttttgtgtttaactgaaagCAAAAAATggaaagtttggaaccacttgaggttcattgacttccattatgttttttttccctatggaagtcaatagttaccggtttccaacattcttcaaaatatcttcttttgtgtacaacCGAAGAAACAAGCTCAAAAGTTTGGAACGTTTTGATGTTCATTGACCTCCACAACAGAAAccacaaatactatggaggtcaatggttacaggtttttaacattcttcaaaatatcttcttttgtgttcaactaaagaaagaaactcaaaagtttGGAACaaggataagtaaatgatgacagaattgtttgGCGAACTGTCCCATTAAGCGTGGTTTGTTTGCAGCATTTATTAGTAGTCTGCTTTTCAAACTAGAGTGCACCAAAAAGTCGCTGACCCTAaagctgtgtgcgtgtgtgtgcgcggtcAGTGACGGATATTAATGTGATCTGTGGTCTTCTGCTCTGAACGACACTGTGACTGACCGCTGCGGTCCTTCTTGTCCTGCTCTCAATAACATGACGTGCCTTCACATTCTCTCCAACGCGTTTGGCTGTGTTTTTGAGTTCAGAGAACGTTTAGCATCAACCAAGAAAGTACTGTACACATTTTGTAATGTCAAACAACGatggaaataaaaaaacacctcCATTGTAATGCCATCAATAAACAAACATCACAAAACATC

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016605 PML body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDART00000093052

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006213 lncRNA upstream 33868 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008515 lncRNA upstream 329536 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 329536 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 335105 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 336746 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00006224 lncRNA downstream 26578 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 143574 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 246200 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 519508 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 647134 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006216 mRNA upstream 395 2642013 ~ 2649496 (+) True XLOC_003150
TCONS_00006214 mRNA upstream 8583 2633743 ~ 2641308 (+) False XLOC_003150
TCONS_00006212 mRNA upstream 40067 2600612 ~ 2609824 (+) True XLOC_003148
TCONS_00006211 mRNA upstream 40380 2596667 ~ 2609511 (+) False XLOC_003148
TCONS_00006210 mRNA upstream 83199 2554856 ~ 2566692 (+) True XLOC_003147
TCONS_00006219 mRNA downstream 1133 2685112 ~ 2690933 (+) False XLOC_003152
TCONS_00006220 mRNA downstream 3416 2687395 ~ 2688454 (+) True XLOC_003152
TCONS_00006221 mRNA downstream 15972 2699951 ~ 2707028 (+) True XLOC_003153
TCONS_00006222 mRNA downstream 26551 2710530 ~ 2756576 (+) False XLOC_003154
TCONS_00006223 mRNA downstream 26568 2710547 ~ 2760373 (+) False XLOC_003154
TCONS_00006215 other upstream 497 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 459161 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1103660 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1120564 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1918968 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006226 other downstream 61085 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 492707 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 815211 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1281748 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2797774 5481753 ~ 5481884 (+) True XLOC_003176

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_01673559_01688208.mRNA True 5722 mRNA 0.47 13 CI01000057 1671911 ~ 1689282 (+)
bowfin (Amia calva) AMCG00007057 True 1224 mRNA 0.53 2 CM030123.1 2238167 ~ 2244432 (-)