RNA id: TCONS_00006229


Basic Information

Item Value
RNA id TCONS_00006229
length 5190
RNA type mRNA
GC content 0.54
exon number 33
gene id XLOC_003157
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2855430 ~ 2974067 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGTACATACATATCAGAAGCCGTGTGCGCTTTCGGATGTACGCTCGTGCACCTCTCGCACATATGACAGGATATAAGCTCGAAAGAAGAAGAAATGCCAATCTCCGTCATATGCCGTGCGGGTTACACATCATTACACGTAGTTTTATAGAGGTGAGCGGCGATGTGTGGATACGTAATAATAACGCTGACTGACGGAGCGGGGTCGCGCGCTTGTTAACGCACAACACTGTGTGCGGCTCGCGCGTAAACTTTGAGAACTTCACAGCATCACTTCTCATTTTTGACGGGCGAGGTGAAACAACAGCGCAAAGCATGGCGACACAAAACGACTGCTCTGTCAAGGTCTCTTTAAGGATCCGTCCTCAGATGGCGAAGGAGAAGATCGAGGGATGCCACATCTGCACCTCCGTCACTCCCGGCGAGCCGCAGGTGCTCTTGGGTAAAGATAAAGCCTTCACGTATGACTTTGTGTTTGACCTGGATGCTCATCAGCAGCAGATCTACAGCGCCTGCGTTCACAAGCTCATCGAGGGCTGCTTTGAGGGATACAACGCTACCGTCTTCGCTTACGGACAGACAGGCTCAGGAAAGACGTACACCATGGGCACTGGTTTTGACGTGAGCGTGTCGGAGGACGAGCAGGGGATCATCCCGCGGGCCGTACACCAGCTCTTTCAGGGCATCCAGAAACGCAGACTAGAGGCTCAGAGCGCAGACATCCCTCCGCCAGATTTCAAAGTCAGCGCACAGTTCCTGGAGCTCTACAATGAGGAGATCCTGGACCTGTTTGACAGCACGCGTGATCCTGAGGCTCGAGGCCGGAAGTCCAATATTAAGATCCACGAAGACGGCAGCGGAGGAATCTACACCACTGGAGTGACCTCACGACTGGTCAGCTCAGAGGACGAGctCCTGCAGTGTCTAAAGCTGGGCGCTCTCTCCCGCACCACCGCCAGCACACAGATGAACGCCCAGAGCTCCCGTTCGCACGCCATCTTCACCATCCACCTCTGCCAGATGAGAGTCTGCCCACAGCCACAACTGGTGAACGGAGAGCTGAATGGAGTCTCTGACGGCTCCATGTCTCAGTCCGAATACGAGACGCTCTCTGCCAAGTTTCACTTTGTGGATCTGGCGGGATCAGAGCGTCTCAAACGCACCGGAGCCACAGGAGAGCGCGCACGGGAGGGCATCTCCATCAACTGTGGACTGCTGGCTCTGGGTAACGTGATTAGTGCTCTGGGGGATCAGAGTAAGAGGGCTGGACATGTGCCTTACAGAGACTCCAAACTCACCCGCCTGCTGCAGGACTCACTGGGAGGAAACAGTCGGACTGTGATGATTGCCTGCGTGAGCCCGTCTGATCGCGACTTCATGGAGACCCTGAACACGCTGAAGTATGCCAACCGGGCCCGCAACATCAAGAACAAGGTGATCGTCAACCAGGATAAAACCAGCCAGCAGATCAGCGCGTTACGAGCCGAGATCGCACGACTACAGATGGAGATCATGGAGTATAAAgcgGGAAAGCGAGTGGCCTGTGACGAGGGATCAGAAGGTTTTAGCGATTTGTTTCAGGAGAACTCGATGCTCCAGAGAGAGAATGACACTCTTCGAATGCGAGTTAAAGCCATGCAGGAAACCATCGACCATCTCAATACTCGCGTCACGCAACTGCTAACAAACGGAGTCAACCTGCTGCTCACAAAGACCGGAGAGACAAATGAAGAGATTGGCAATCTCATCCAGAACTACATTCGGGAAATTGAAGAGCTGAGGTCTAAGCTGCTGGAAAGTGAAGCCATGAACGAGTCTCTGAGGCGCAGTTTGTCTCATCTGTCGTCCCGCTCTCCGTATCCCGCATCCCACCCATCTGCTCCATCCATTGGCTCCTCCCCCTCTGTTTCCATGGAGGCGGAGATGACCGATGTGATTCGCCAGGCCAAATTAGATGTGGAGCGGCTGAAGAAGAAAGAGAGGAATCAGAGGAGGAAGAGTCCAGAGAAAGAGAAGGGTTTGAAGAAGAGAGCCAAACTTCATCCCGAGGATAGCGGAGTGAAGAGTGAGAACGGGCTGAACCGAGCGAATGAAGAGAGACGAGAAAATGGAGATGGAGACTCTGATAATGAGCCTGAAGAGGATGGCATGTATCCACTGCAGGAGGATGATCACGGTGAGAGCGGCTGCgatgaagaagaggaagaggaagaggaaacCAGGGAGGAGGAAGAGTTCGACAGCGACGAGAGCTTGGTGGATTCGGACTCTGACAACGATGAGAAAGTGAACCTGCAGGCAGATCTGGCGGACCTGACGTGCGAGATCGAGATCAAGCAGAGACTCATCGATGAGCTGGAGAACAGCCAACGGCGGCTGCTGACGCTCAAGAGTCAGTATGAGGAGAAGCTGATCCTGCTGCAGAACAAGATCAGAGACACCCAGCTGGAGAGAGACCGCGTGCTGCACAACCTCATGTCGATGGAGAACTACACTGAAGAGAAAGCCAGTAAGGTGAAGTCCGAGTACGAGAAGCGCCTGAAGGAGATGAACCGGGATCTGCTGAAGCTCCAGGCCGCACAGAAGGAGCACGCGCGTCTGCTGAAGAACCAGGGCCGATACGAGAGAGAGCTGAAGAAACTGCAGTCTGAGGTggccgagatgaagaaggcaaagGTGGCACTGATGAAGCAGATGAAGGAGGAGCAGCAGAGGAGGAGGATGATAGACGCCAAGAGGAACCGAGAAATCGCACAACTGAAGAAAGAGCAGCGGCGACAAGAGTATCAGATTCGTGCTCTGGAGTCCCAGAAGCGGCAGCAGGAGCTGGTGTTGCGCAGGAAGACTCAGGAGGTGACGGCGCTCCGGCGTTTGGCTAAGCCCCTGTCAGAGCGGGCAGCTGGACGAGTGTCCCGCAGACTCACCAGTGTGGACTCTGGAGCAGAACTGTCCACcagcaccaccaccaccacctcctcTGAGCCAGAGTCTAGCCGCTCCGTCTCCAGCATCATCCGCCACTGGAACACCAAACTCAACGGGTACCTGGGGGAAACCGACAGCCATGCACCTGCGGCAAACATGGCCAGTAGCAGAAAAAAGTTCCAGCGGAAGGGTCCGAGCAGCGGTTTCTCCAAGACGGCGCGTCAGAAGTGGCAGTCTCTGGAGAGGAGGATCATGGACATCGTCATGCAGAGAATGACCATCACTAATGTGGAGGCGGATATGGACCGCCTCATTAAGAAACGCGAGGAGCTCTCAGTGCAGCAGGAGGCGCTGCTGCGTAAGAGAGAGAAGCTGCTGAGTGAAAGCTTCAGAGAAGAGGACGAGGAGAGACTCCTGCAGGAGATGAACGAGGAGATCGAGGTGCTCAACGCTAATATAGACTACATCAGCGACAGCCTGTCTGACTGCCAGGCCACCATCGTGCAGATTGAGGAGACCAAGGATGAGCTGGACTCTGTGGACACATCAGTGGTCATCAGCTCCTGCTCTCTGGCTGAAGCTCGATCTCTACTCGACTACTTCCTCAAAGCCTCCATTGACAAGGGTTTACAGGTCGCCCAGAAGGAGGCTCAGATTCGCCTGCTGGAAGGTCAGCTGCGGCAGACTGATGTGATCGGCTCGTCCCATAATCACATGATCCTGGACGCTCTGAGGGAAAAGGCGGAGTGCATCCCTGAACTGCAGGCTTTAATCCATAATGTCCAACAAGAGAACGGCTATGCCAGCACAGATGAGGAGGTGTCTGAGTTCAGTCAGGCCTCGGAGAGCGGATTTTCCCAAATGAAGTTGTCTGCGAGTCAAGATGACTTTAAGATGAAGGTTGAGCCTCGACTCTCCGCACAAATGAAGGCGGTTTCAGCCGAGTATTTGGGCCCAATTCTGGACCTGAACTCTAAAAACATCACCAAGTCTCTGGCGTCCCTGTCAGAGATCCAGGAGAACGGTTTGCTCCTCAAAGACACATACTGTAGAGAGCTGGTGTCTCGAACCATCAGCCTGCCCATCAGAGGACACACATTAAGTCCAGACGTGGGCTACACTCCTCCTCCATCTCCTCCGCTCCGACAACGTAATGACCGCAATGTGTTTTCCCGCTTGACCAGCAACCAGAGCCAGGGCTCAGCACTCGACAAGTCGGATGACAGCGACTCCTCTCTCTCGGAGGTGCTCAGGGGTGTGATCACTCCCACAGGTGGGCTGAAGGGGGGCAGGACAGCCCCTCTGCAGTGCGTGGCCATGGCTGAAGGACACACCAAACCTGTGCTCTGCCTGGACGCCACCGATGAACTGCTTTTCACCGGCTCTAAAGATCGAACTTGCAAGATGTGGAACCTGGTCACCGGGCAGGAAATTGTGACCCTGAGAGGGCATCCTAACAACGTAGTATCTGTCAAATATTGCTGCAACTCCAGCCTAGTCTTCACGGTTTCAACCTCATTTATCAAAGTTTGGGACATTCGGGATTCTGCCAAGTGTGTTCGAACATTCACGTCATCGGGTCAGGTGGTCTCGGGAGACGCCTGTGCTGGAACAACCACCCGCACCATCACGACAGCCCAGGGCGAGTACCAAATCAACCAAATCGCCCTCAATCCTTCAGGATCAGTGCTCTACGCGGCTGCAGGAAACACTGTCCGCACTTGGGATCTCAATAGAATGCAGGCCACCGGGAAGCTGACAGGACACATCGGCTCAGTGATGTGTCTTACAGTGGGTTATTCTGCCGGAGGCAAAGACCAGGTGATCACTGGATCCAAAGACCATTATGTCAAGATATTTGACGTTGCGGAGGGAGCTCAGGGAAACATCGGCCCCGCTCATAACTTTGAGCCTCCTCATTACGATGGCATTGAGTGTCTCGCTGTACACGGTGACGTGCTTTTCAGTGGCTCCCGGGACAACGGCATTAAGAAATGGGATCTGCGACAGCAGGAACTGATTCAGCAAATCCCAAATGCACATAAGGACTGGGTGTGTGCGCTGGCGTTTGTTCCCGGGCGGCCGATGCTCCTCAGCGCCTGCCGGGCAGGAATGCTGAAGGTGTGGAACGTGGACAACTTCACGCCCATCGGGGATATCAAGGGTCACGACAGCCCCATCAATGCCATCTGCACCAACTCCAAACAGATCTTCACTGCATCCAGTGACATGAGAGTGAAGATCTGGAATCCGAAGATGGGGA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-537 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Orthologous to human KIF21B (kinesin family member 21B).

Ensembl:

ensembl_id ENSDART00000172837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006228 lncRNA upstream 26755 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00006224 lncRNA upstream 124992 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006213 lncRNA upstream 239407 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008515 lncRNA upstream 535075 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008516 lncRNA downstream 229420 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 357046 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006252 lncRNA downstream 611962 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008518 lncRNA downstream 641683 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00008519 lncRNA downstream 797199 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006227 mRNA upstream 28868 2763168 ~ 2826562 (+) True XLOC_003155
TCONS_00006223 mRNA upstream 95057 2710547 ~ 2760373 (+) False XLOC_003154
TCONS_00006225 mRNA upstream 97371 2710569 ~ 2758059 (+) False XLOC_003154
TCONS_00006222 mRNA upstream 98854 2710530 ~ 2756576 (+) False XLOC_003154
TCONS_00006221 mRNA upstream 148402 2699951 ~ 2707028 (+) True XLOC_003153
TCONS_00006231 mRNA downstream 31469 3005536 ~ 3195784 (+) False XLOC_003158
TCONS_00006232 mRNA downstream 32057 3006124 ~ 3195882 (+) True XLOC_003158
TCONS_00006235 mRNA downstream 237759 3211826 ~ 3249117 (+) False XLOC_003161
TCONS_00006234 mRNA downstream 237759 3211826 ~ 3249117 (+) False XLOC_003161
TCONS_00006236 mRNA downstream 237759 3211826 ~ 3258701 (+) False XLOC_003161
TCONS_00006226 other upstream 107633 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 206036 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 664700 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1309199 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1326103 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006233 other downstream 202619 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 525123 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 991660 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2507686 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 2557376 5531443 ~ 5531576 (+) True XLOC_003178

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013848 True 6441 mRNA 0.47 7 CM030125.1 45443086 ~ 45456185 (+)