Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006242 |
| length | 1323 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 8 |
| gene id | XLOC_003162 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 3279039 ~ 3291771 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004222 | metalloendopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko01002 | Peptidases and inhibitors |
| id | description |
|---|---|
| ZDB-GENE-100308-3 | Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19). |
| ensembl_id | ENSDART00000181012 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008516 | lncRNA | upstream | 75201 | 3203487 ~ 3206698 (+) | True | XLOC_003160 |
| TCONS_00008381 | lncRNA | upstream | 351325 | 2930179 ~ 2930574 (+) | True | XLOC_003157 |
| TCONS_00006228 | lncRNA | upstream | 453224 | 2827553 ~ 2828675 (+) | True | XLOC_003156 |
| TCONS_00006224 | lncRNA | upstream | 551461 | 2710557 ~ 2730438 (+) | False | XLOC_003154 |
| TCONS_00006213 | lncRNA | upstream | 665876 | 2615070 ~ 2616023 (+) | True | XLOC_003149 |
| TCONS_00008517 | lncRNA | downstream | 39342 | 3331113 ~ 3333714 (+) | True | XLOC_003164 |
| TCONS_00006252 | lncRNA | downstream | 294258 | 3586029 ~ 3590937 (+) | True | XLOC_003168 |
| TCONS_00008518 | lncRNA | downstream | 323979 | 3615750 ~ 3735803 (+) | True | XLOC_003169 |
| TCONS_00008519 | lncRNA | downstream | 479495 | 3771266 ~ 3783125 (+) | True | XLOC_003170 |
| TCONS_00006257 | lncRNA | downstream | 734508 | 4026279 ~ 4086851 (+) | True | XLOC_003173 |
| TCONS_00006240 | mRNA | upstream | 9879 | 3254524 ~ 3272020 (+) | True | XLOC_003161 |
| TCONS_00006239 | mRNA | upstream | 10467 | 3254252 ~ 3271432 (+) | False | XLOC_003161 |
| TCONS_00006236 | mRNA | upstream | 23198 | 3211826 ~ 3258701 (+) | False | XLOC_003161 |
| TCONS_00006243 | mRNA | downstream | 16885 | 3308656 ~ 3318747 (+) | True | XLOC_003163 |
| TCONS_00006244 | mRNA | downstream | 207340 | 3499111 ~ 3525259 (+) | False | XLOC_003165 |
| TCONS_00006245 | mRNA | downstream | 207366 | 3499137 ~ 3521095 (+) | False | XLOC_003165 |
| TCONS_00006247 | mRNA | downstream | 209898 | 3501669 ~ 3521095 (+) | True | XLOC_003165 |
| TCONS_00006248 | mRNA | downstream | 247217 | 3538988 ~ 3566250 (+) | True | XLOC_003166 |
| TCONS_00006233 | other | upstream | 105129 | 3176686 ~ 3176770 (+) | True | XLOC_003159 |
| TCONS_00006226 | other | upstream | 534102 | 2745064 ~ 2747797 (+) | True | XLOC_003154 |
| TCONS_00006215 | other | upstream | 632505 | 2633791 ~ 2649394 (+) | False | XLOC_003150 |
| TCONS_00006199 | other | upstream | 1091169 | 2190621 ~ 2190730 (+) | True | XLOC_003138 |
| TCONS_00006172 | other | upstream | 1735668 | 1546117 ~ 1546231 (+) | True | XLOC_003126 |
| TCONS_00006246 | other | downstream | 207419 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006254 | other | downstream | 673956 | 3965727 ~ 3968309 (+) | True | XLOC_003171 |
| TCONS_00006260 | other | downstream | 2189982 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
| TCONS_00006262 | other | downstream | 2239672 | 5531443 ~ 5531576 (+) | True | XLOC_003178 |
| TCONS_00006273 | other | downstream | 2588804 | 5880575 ~ 5923741 (+) | False | XLOC_003185 |
