RNA id: TCONS_00006246


Basic Information

Item Value
RNA id TCONS_00006246
length 559
RNA type nonsense_mediated_decay
GC content 0.46
exon number 6
gene id XLOC_003165
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3499111 ~ 3525259 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTGTTGTGCTCAGTTTGGgttatatataacatttaataaagaTTTGTATATTTACTTCAGcgacacaaacacatacacaaacacacgttGGTCTCTCAATCCTGTTTATGCTCCGCGACTTTAACGTTAAACGAACGGACTGTGAATCATGCAACAAACTGTCGCGCGGTATTTAATCTTTTTCCAGTACACAGGGAGCAAATACAGTGGTGTGATGAAGGCTCCAGCTCATCAAGCTGTACAGGGGGTCGGGAATCATTTAGAGAATGCAGTGAGGAAGCTGAAGCCGGTGAATGAGATATCCAGCGGAGAGCAGACAAACCACCCTTGTCAGAGCAGAGCCTGCTCGaggctttaaactttcaattaaAAGAAGAACCTATAAGAATCACCAGAGCTTACCGTGTCCACAGTGACTTCCACGCACGCTATCAGGCGCAATCGCGGACATACGTATACCGCTTGGCTCTGGGTTGTCAGCATCACACACTAATGCCACTGACGGAGAAGGATCTATGCTGGGCATTACGAGACACGAGGTTAAATATTGATGCGAT

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0106029 tRNA pseudouridine synthase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101110-1 Predicted to enable RNA binding activity and tRNA pseudouridine synthase activity. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUSL1 (pseudouridine synthase like 1).

Ensembl:

ensembl_id ENSDART00000163336

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008517 lncRNA upstream 165476 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00008516 lncRNA upstream 292492 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008381 lncRNA upstream 568616 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00006228 lncRNA upstream 670515 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00006224 lncRNA upstream 768752 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006252 lncRNA downstream 71921 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008518 lncRNA downstream 101642 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00008519 lncRNA downstream 257158 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006257 lncRNA downstream 512171 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008382 lncRNA downstream 1962740 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006243 mRNA upstream 180443 3308656 ~ 3318747 (+) True XLOC_003163
TCONS_00006242 mRNA upstream 207419 3281899 ~ 3291771 (+) True XLOC_003162
TCONS_00006241 mRNA upstream 209394 3279039 ~ 3289796 (+) False XLOC_003162
TCONS_00006240 mRNA upstream 227170 3254524 ~ 3272020 (+) True XLOC_003161
TCONS_00006239 mRNA upstream 227758 3254252 ~ 3271432 (+) False XLOC_003161
TCONS_00006248 mRNA downstream 24880 3538988 ~ 3566250 (+) True XLOC_003166
TCONS_00006249 mRNA downstream 61855 3575963 ~ 3584553 (+) False XLOC_003167
TCONS_00006250 mRNA downstream 64435 3578543 ~ 3583781 (+) True XLOC_003167
TCONS_00006251 mRNA downstream 71826 3585934 ~ 3593118 (+) False XLOC_003168
TCONS_00006253 mRNA downstream 445387 3959495 ~ 3971035 (+) False XLOC_003171
TCONS_00006233 other upstream 322420 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 751393 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 849796 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 1308460 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1952959 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006254 other downstream 451619 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 1967645 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 2017335 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 2366467 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 2520134 6034242 ~ 6037553 (+) True XLOC_003188

Expression Profile

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