Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006251 |
| length | 1429 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 4 |
| gene id | XLOC_003168 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 3585934 ~ 3593118 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009972 | cytidine deamination | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0004126 | cytidine deaminase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1911 | Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase). |
| ensembl_id | ENSDART00000055694 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008517 | lncRNA | upstream | 252220 | 3331113 ~ 3333714 (+) | True | XLOC_003164 |
| TCONS_00008516 | lncRNA | upstream | 379236 | 3203487 ~ 3206698 (+) | True | XLOC_003160 |
| TCONS_00008381 | lncRNA | upstream | 655360 | 2930179 ~ 2930574 (+) | True | XLOC_003157 |
| TCONS_00006228 | lncRNA | upstream | 757259 | 2827553 ~ 2828675 (+) | True | XLOC_003156 |
| TCONS_00006224 | lncRNA | upstream | 855496 | 2710557 ~ 2730438 (+) | False | XLOC_003154 |
| TCONS_00008518 | lncRNA | downstream | 22632 | 3615750 ~ 3735803 (+) | True | XLOC_003169 |
| TCONS_00008519 | lncRNA | downstream | 178148 | 3771266 ~ 3783125 (+) | True | XLOC_003170 |
| TCONS_00006257 | lncRNA | downstream | 433161 | 4026279 ~ 4086851 (+) | True | XLOC_003173 |
| TCONS_00008382 | lncRNA | downstream | 1883730 | 5476848 ~ 5477683 (+) | False | XLOC_003175 |
| TCONS_00008383 | lncRNA | downstream | 1893529 | 5486647 ~ 5489708 (+) | True | XLOC_003175 |
| TCONS_00006249 | mRNA | upstream | 1381 | 3575963 ~ 3584553 (+) | False | XLOC_003167 |
| TCONS_00006250 | mRNA | upstream | 2153 | 3578543 ~ 3583781 (+) | True | XLOC_003167 |
| TCONS_00006248 | mRNA | upstream | 19684 | 3538988 ~ 3566250 (+) | True | XLOC_003166 |
| TCONS_00006244 | mRNA | upstream | 60675 | 3499111 ~ 3525259 (+) | False | XLOC_003165 |
| TCONS_00006245 | mRNA | upstream | 64839 | 3499137 ~ 3521095 (+) | False | XLOC_003165 |
| TCONS_00006253 | mRNA | downstream | 366377 | 3959495 ~ 3971035 (+) | False | XLOC_003171 |
| TCONS_00006255 | mRNA | downstream | 396285 | 3989403 ~ 3993738 (+) | True | XLOC_003172 |
| TCONS_00006256 | mRNA | downstream | 433111 | 4026229 ~ 4132662 (+) | False | XLOC_003173 |
| TCONS_00006258 | mRNA | downstream | 1360846 | 4953964 ~ 5463254 (+) | True | XLOC_003174 |
| TCONS_00006259 | mRNA | downstream | 1875511 | 5468629 ~ 5493191 (+) | False | XLOC_003175 |
| TCONS_00006246 | other | upstream | 71826 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006233 | other | upstream | 409164 | 3176686 ~ 3176770 (+) | True | XLOC_003159 |
| TCONS_00006226 | other | upstream | 838137 | 2745064 ~ 2747797 (+) | True | XLOC_003154 |
| TCONS_00006215 | other | upstream | 936540 | 2633791 ~ 2649394 (+) | False | XLOC_003150 |
| TCONS_00006199 | other | upstream | 1395204 | 2190621 ~ 2190730 (+) | True | XLOC_003138 |
| TCONS_00006254 | other | downstream | 372609 | 3965727 ~ 3968309 (+) | True | XLOC_003171 |
| TCONS_00006260 | other | downstream | 1888635 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
| TCONS_00006262 | other | downstream | 1938325 | 5531443 ~ 5531576 (+) | True | XLOC_003178 |
| TCONS_00006273 | other | downstream | 2287457 | 5880575 ~ 5923741 (+) | False | XLOC_003185 |
| TCONS_00006283 | other | downstream | 2441124 | 6034242 ~ 6037553 (+) | True | XLOC_003188 |
