RNA id: TCONS_00006253


Basic Information

Item Value
RNA id TCONS_00006253
length 2090
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_003171
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3959495 ~ 3971035 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGCGGAAGTGAGGAGTTGAGACACGTGCTGCTGTTCTGTGAGCGCGTGCTGGAGCTGCGGCAGACATGAAGAGACCGAAGTTGAAGAAGGCGAGCAAGCGCTTATCATGCGCTAAAcgctacaaaatacaaaagaagGTTCGGGAGCACAATCGTAAATTAAAGAAAGCCGCAAAGAAGCAAGGCATAAGTCGAAAGGCCAAAAAAGATATTGGAGTCCCAAACAGTGCGCCTTTTAAAGAGGAAGTGCTTCGAGAAGCTGAGCAGAGAAAACAGGAGCTTGAAACTCTGAAAGAGCAAAACAAGATCGTGAAGCAGCAAGAAAAGGCTGCCAAGCGGAAAAAGGAGAAAGATGCAGCCAGTTCAGTAAAAGAGCCTGCAGCCAAGAAAGCTAAAAAGGCAGCGAAAATCAAAGAAGCAAGAGCAGCGATAGTTAAAGTGAAGAGCGCTAAAACATTCAAATGCCAAGAACTCAACAAGGTGATTGAGGCGTCTGATGTGATCGTGGAGGTTTTGGATGCCAGAGATCCTCTGGGCTGCCGCTGTCCTCAACTGGAGGAAATGGTCCTGAAACACGAGGGAAAGAAGAAACTCTTGTTCATATTGAACAAAATAGATCTTGTTCCTAAAGATAACCTAGAGAAGTGGCTCCACTTTCTTGAAGCCGAGTGTCCAACTTTTCTGTTCAAATCATCGATGCAACTAAAGGACAGAACAGTGCAACAGAAGAGGCAGCAGCGAGGAACTAACGCAGTTCTGGATCACAGCCGAGCAGCTTCCTGTTTTGGAAAAGACTTTCTCCTACAGACACTTAATGACTTGGCGAACAAGAAAGAGGGCGAAACCATGCTAAAAGTTGGCGTCGTCGGTTTTCCTAACGTTGGAAAGAGCAGCATCATCAACAGTTTGAAAGAAATGCGAGCGTGCAATGCTGGCGTACAGAGAGGATTGACTAGGTGTATGCAGGAAGTGCATATTACCAAGAAAGTGAAGATGATTGACAGTCCCGGGATTTTGGCGGCCCTCAGTAACCCTGGAAGTGCGATGGCCCTCAGGAGCCTGCAGGTGGAGGAGAAAGAGGAGAGTCCGCAGGAAGCCGTCAGGAATCTACTCAAACAGTGCAATCAGCAGCATATAATGCTACAGTATAATGTCCCAGACTACAGAAGCTCCTTAGAGTTTTTGACCACCTTTGCCATGAAGCACGGGCTCCTGCAGAAAGGTGGCGTTGCAGACACTGAACTGGCAGCCACAACATTCCTCAACGACTGGACAGGGGCTAAGCTGAGTTACTACAGCAGAGTTCCAGAGCGACAGGGTCTTCCCTCTTACCTGTCCGACGCCATCGTGACTGAACTGCAGTCAGATGTGGATATGGATGCTGTGAAGAAGGGGAACGAGAATGTAAAGAGAAGTGTTCGCTTTCCAAACCTCGCGAGCTGCATAAGCTTTGACTCCAGTGGTCCCACTGCTGGAGTGCTGGATGTCAGTGAGCTGCCTAAAGAGATCTTAACAAAGGCAGCAACAACAACAGATGCAGAAGAAGAGAAGATGGATACGACAACCAACACAGATGAGCCTGAGGCCGAAAGCCATATTTCATCAACCGTGGAACCGATTCAGGAACCAACAGAAAAGAGAAAAGatAAACCAGCAAAAGAAGTGAAGTTTGTACCAGTCAACACTGACCTGACGTCAATGCAGAACAAGAACAATGAGGATGCATACGATTTCAACACAGACTTTGTGTAAAAATTCACTATAATTATTTACATGGACTGAGAGGAATTAAATAGTAAAATGCACTCAGTTGCAGTGCATCTCATGTTTGTatgtaataatacataaaatgtttgtttcaCTAAATACAAGGTAAAACTCTTACATTGCTTACAAAACTTATACTGAGCTTTATTCAATACTTGGTTAGAACCATTTTCCCCTTTATGTACAAATTAGCACACTTTCCCCTTCAGATTTGAAGCTGAAATATTCATGTAACAGAAACGTGGTGTCAAAAATAGACATTTGAACTATCACAGGTTTGTCTTAAAGTCCTGAACAAGTcgactacactacctgacaaaa

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0003407 neural retina development biological_process
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-616 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in head; immature eye; midbrain; and somite. Orthologous to human GNL3 (G protein nucleolar 3).

Ensembl:

ensembl_id ENSDART00000122953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008519 lncRNA upstream 176370 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00008518 lncRNA upstream 223692 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006252 lncRNA upstream 368558 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008517 lncRNA upstream 625781 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00008516 lncRNA upstream 752797 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00006257 lncRNA downstream 55244 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008382 lncRNA downstream 1505813 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00008383 lncRNA downstream 1515612 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008384 lncRNA downstream 1631305 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00006271 lncRNA downstream 1871642 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006251 mRNA upstream 366377 3585934 ~ 3593118 (+) False XLOC_003168
TCONS_00006249 mRNA upstream 374942 3575963 ~ 3584553 (+) False XLOC_003167
TCONS_00006250 mRNA upstream 375714 3578543 ~ 3583781 (+) True XLOC_003167
TCONS_00006248 mRNA upstream 393245 3538988 ~ 3566250 (+) True XLOC_003166
TCONS_00006244 mRNA upstream 434236 3499111 ~ 3525259 (+) False XLOC_003165
TCONS_00006255 mRNA downstream 18368 3989403 ~ 3993738 (+) True XLOC_003172
TCONS_00006256 mRNA downstream 55194 4026229 ~ 4132662 (+) False XLOC_003173
TCONS_00006258 mRNA downstream 982929 4953964 ~ 5463254 (+) True XLOC_003174
TCONS_00006259 mRNA downstream 1497594 5468629 ~ 5493191 (+) False XLOC_003175
TCONS_00006261 mRNA downstream 1528626 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006246 other upstream 445387 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 782725 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 1211698 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 1310101 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 1768765 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006260 other downstream 1510718 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 1560408 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 1909540 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 2063207 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 2165286 6136321 ~ 6144643 (+) True XLOC_003192

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_02693930_02700711.mRNA True 1266 mRNA 0.47 10 CI01000057 2693930 ~ 2700711 (+)