RNA id: TCONS_00006257


Basic Information

Item Value
RNA id TCONS_00006257
length 495
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_003173
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4026229 ~ 4132662 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCAGAGCTGCGAGACCAGTGCAAGACGCGGTTCTGCACCTCTCCGGTTTACAGTTTCTCCATCATCGACCGTAGCAAAATGCCCCTGGGAGAGGATGGACCCTCTTGGAAAAAGAAAACAGCGAACATCAAGGATATCTATGACTTCAAAGAGGTTTTGGGCACAGGGGCTTTTTCTGAGGTGATGCTCGCTGAGGAGAAGAGGACGAGGAAACTGGTGGCCGTAAAGTGCATAGCCAAAAAAGCTCTGGAGGGAAAGGAGAACAGCATTGAAAATGAGATCGCCGTCCTCCACAAGTGAGTCATTCATACAGCTGTTCCACTTCACTTACAGATAtacagatgacacacacacacacacactgttcgatgtaaaatacagactgtggaatgtatttttaacagaaatattctgtagatAAAATTTTTgattgaaaaatgttaaaaacagtagattactggcaaccacagctgccggtatttttcagtaaaat

Function

GO:

id name namespace
GO:0032147 activation of protein kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141014-1 Enables calmodulin-dependent protein kinase activity. Involved in activation of protein kinase activity. Is expressed in female organism. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).

Ensembl:

ensembl_id ENSDART00000161338

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008519 lncRNA upstream 243154 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00008518 lncRNA upstream 290476 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006252 lncRNA upstream 435342 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008517 lncRNA upstream 692565 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00008516 lncRNA upstream 819581 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008382 lncRNA downstream 1389997 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00008383 lncRNA downstream 1399796 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008384 lncRNA downstream 1515489 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00006271 lncRNA downstream 1755826 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 1800835 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00006255 mRNA upstream 32541 3989403 ~ 3993738 (+) True XLOC_003172
TCONS_00006253 mRNA upstream 55244 3959495 ~ 3971035 (+) False XLOC_003171
TCONS_00006251 mRNA upstream 433161 3585934 ~ 3593118 (+) False XLOC_003168
TCONS_00006249 mRNA upstream 441726 3575963 ~ 3584553 (+) False XLOC_003167
TCONS_00006250 mRNA upstream 442498 3578543 ~ 3583781 (+) True XLOC_003167
TCONS_00006258 mRNA downstream 867113 4953964 ~ 5463254 (+) True XLOC_003174
TCONS_00006259 mRNA downstream 1381778 5468629 ~ 5493191 (+) False XLOC_003175
TCONS_00006261 mRNA downstream 1412810 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006263 mRNA downstream 1478231 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006264 mRNA downstream 1478231 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006254 other upstream 57970 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 512171 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 849509 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 1278482 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 1376885 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006260 other downstream 1394902 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 1444592 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 1793724 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 1947391 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 2049470 6136321 ~ 6144643 (+) True XLOC_003192

Expression Profile

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