RNA id: TCONS_00008382


Basic Information

Item Value
RNA id TCONS_00008382
length 737
lncRNA type sense_over
GC content 0.39
exon number 2
gene id XLOC_003175
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5468629 ~ 5493191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGACTATTTTGTGACAGTTTTGTTGGATTAATTGTGTCCGGGAACATTGCTTTTGTAGCTTGTGAGCAATGCAATCCAGTTTTTGGCATCTGTGTGTGAGCGACCACACTATAAGCATCTCTTTGAGGACCAGAATGTTCTCACCAGCATCTGTGAGAAGGTCATCGTACCCAACATGGAGTTCAGAAGTGCAGATGAAGAGGCTTTTGAAGATAACTCAGAGGAGTACATCATCAGAGATCTTGAAGGCTCAGGTTTGTTGACACTTCTCTGTATTGTTCAGACGCTTGGTTTTTGTGATGTTTGTACTGAATGGTCTCTTCTGTTCTCAAAGACATCGACACAAGACGCAGAGCAGCCTGTGATTTGGTGCGAGGCCTTTGTAAGTTTTTCGAGGGCCCGGTGACGGGTATCTTCTCTGGATATGTGAACTCAATGTTGGCAGAGTACGCCAAAAACCCTGGTGTGAACTGGAAGCACAAAGATGCCGCCATCTACTTGGTTACATCTCTAGCATCCAAAGCTCAGACACAAAAGGTGAGATGGTCTTTGTTGATGATAACTCCGTAAGCAGAGTACTGATTTCGTTTCACTTTACTATGAACTCTTTCAACTCTTTAAATGAActcattttaaagcatttttaaatatatttattatctattttaaTGTTAACATAAATCTGCAGTAAGAAAATGATTAAACTAAATCTCAATTtttacaccaaaaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0006611 protein export from nucleus biological_process
GO:0007589 body fluid secretion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0009925 basal plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006257 lncRNA upstream 1389997 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008519 lncRNA upstream 1693723 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00008518 lncRNA upstream 1741045 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006252 lncRNA upstream 1885911 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008517 lncRNA upstream 2143134 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00008383 lncRNA downstream 8964 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008384 lncRNA downstream 124657 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00006271 lncRNA downstream 364994 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 410003 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00008520 lncRNA downstream 477582 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00006258 mRNA upstream 13594 4953964 ~ 5463254 (+) True XLOC_003174
TCONS_00006256 mRNA upstream 1344186 4026229 ~ 4132662 (+) False XLOC_003173
TCONS_00006255 mRNA upstream 1483110 3989403 ~ 3993738 (+) True XLOC_003172
TCONS_00006253 mRNA upstream 1505813 3959495 ~ 3971035 (+) False XLOC_003171
TCONS_00006251 mRNA upstream 1883730 3585934 ~ 3593118 (+) False XLOC_003168
TCONS_00006261 mRNA downstream 21978 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006263 mRNA downstream 87399 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006264 mRNA downstream 87399 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006265 mRNA downstream 110439 5588122 ~ 5659681 (+) True XLOC_003179
TCONS_00006266 mRNA downstream 188642 5666325 ~ 5674923 (+) True XLOC_003181
TCONS_00006254 other upstream 1508539 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 1962740 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2300078 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 2729051 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 2827454 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006260 other downstream 4070 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 53760 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 402892 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 556559 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 658638 6136321 ~ 6144643 (+) True XLOC_003192

Expression Profile

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