RNA id: TCONS_00008383


Basic Information

Item Value
RNA id TCONS_00008383
length 726
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_003175
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5468629 ~ 5493191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTGGTTTTATTCATTTACAGCTCACCCTTATTAGGACTCATATTGACTGTTTGTTAGTGCTCGCAGCACATCAATGCCTCAATCTGCTTGACCCTATATTAGATCTCCGTTTACAGCATaccttttgttattgttttttgttttctgattGTTGCTTTTGGTCTGCATTTCAGGATGTTTGGGATGGTTGTGGAGAAGATTGTGATTCCTGAGGTGCAGAAGGTGTCAGGGCAGGTGGAGAAGAAGATCTGTGCTGTGGGAATCATCAAGATCCTCACCGAGTGTCCCGCCATGATGGACACCGAGTACACCAAACTCTGggcTCCTTTGCTGcaggctctgattggtttatttgaGTTGCCAGAAGATGACAGCATCCCAGATGATGAGCACTTCATTGACATCGAGGACACTCCAGGATACCAGACCGCTTTCTCCCAGCTTGCTTTTGCAGGCAAGAAAGAGCACGACCCCATCGGCGACGCCGTCAGCAATCCCAAAATCCTCCTGGCTCAGTCCTTACACAAACTCTCCACCGCCTGTCCCGGAAGAGTTCCCTCCATGTTGAGCACCAGTCTGCCCACTGAAGCTCTTCAGTTCCTGCAGGGTTACCTTCAGGCGGCCACTGTACAGCTGGTGTAGCCACACACTCctttacagacaaaaaaaaaatggggaCCTCCGACACTCAAGACTCCCAAATTGATCTGACCCAAGAAGAGG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0006611 protein export from nucleus biological_process
GO:0007589 body fluid secretion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0009925 basal plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008382 lncRNA upstream 8964 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006257 lncRNA upstream 1399796 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008519 lncRNA upstream 1703522 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00008518 lncRNA upstream 1750844 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006252 lncRNA upstream 1895710 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008384 lncRNA downstream 112632 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00006271 lncRNA downstream 352969 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 397978 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00008520 lncRNA downstream 465557 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA downstream 465578 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00006258 mRNA upstream 23393 4953964 ~ 5463254 (+) True XLOC_003174
TCONS_00006256 mRNA upstream 1353985 4026229 ~ 4132662 (+) False XLOC_003173
TCONS_00006255 mRNA upstream 1492909 3989403 ~ 3993738 (+) True XLOC_003172
TCONS_00006253 mRNA upstream 1515612 3959495 ~ 3971035 (+) False XLOC_003171
TCONS_00006251 mRNA upstream 1893529 3585934 ~ 3593118 (+) False XLOC_003168
TCONS_00006261 mRNA downstream 9953 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006263 mRNA downstream 75374 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006264 mRNA downstream 75374 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006265 mRNA downstream 98414 5588122 ~ 5659681 (+) True XLOC_003179
TCONS_00006266 mRNA downstream 176617 5666325 ~ 5674923 (+) True XLOC_003181
TCONS_00006260 other upstream 4763 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 1518338 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 1972539 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2309877 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 2738850 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006262 other downstream 41735 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 390867 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 544534 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 646613 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 719462 6209170 ~ 6223299 (+) False XLOC_003195

Expression Profile

//