RNA id: TCONS_00008384


Basic Information

Item Value
RNA id TCONS_00008384
length 382
lncRNA type intronic
GC content 0.46
exon number 1
gene id XLOC_003180
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5602340 ~ 5602721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccaatgactgtaaaaaatatggacgacgcgacagccccttttgccattgaacgccttgagggcaaaacgcctgcttgacgggcacaaactgtcgcaaaagactgctgaaattggagccagacatgcgcagaaggactgtctgatggagccagaggaggagccgcgataatgagcggagtcgagcttccaaccaaacgctttatgtaaaatcaaacacgccccccgaacttctcactcgactgccggtgtctgcactataacaaacgctcactgatgtaaatagaagcacttacattaaaaaacacaataatatacggtttaaaaacggtgtgatgtaagctgttaaactttaataaaagcaatacatggtggactgcagaaa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008383 lncRNA upstream 112632 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008382 lncRNA upstream 124657 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006257 lncRNA upstream 1515489 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008519 lncRNA upstream 1819215 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00008518 lncRNA upstream 1866537 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006271 lncRNA downstream 239956 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 284965 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00008520 lncRNA downstream 352544 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA downstream 352565 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00008523 lncRNA downstream 352566 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00006264 mRNA upstream 14188 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006263 mRNA upstream 18513 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006261 mRNA upstream 86418 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006259 mRNA upstream 109149 5468629 ~ 5493191 (+) False XLOC_003175
TCONS_00006258 mRNA upstream 139086 4953964 ~ 5463254 (+) True XLOC_003174
TCONS_00006266 mRNA downstream 63604 5666325 ~ 5674923 (+) True XLOC_003181
TCONS_00006267 mRNA downstream 79041 5681762 ~ 5810958 (+) True XLOC_003182
TCONS_00006268 mRNA downstream 214481 5817202 ~ 5836286 (+) True XLOC_003183
TCONS_00006269 mRNA downstream 239911 5842632 ~ 5852715 (+) False XLOC_003184
TCONS_00006270 mRNA downstream 239942 5842663 ~ 5852595 (+) False XLOC_003184
TCONS_00006262 other upstream 70764 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 120456 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 1634031 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2088232 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2425570 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006273 other downstream 277854 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 431521 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 533600 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 606449 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 607190 6209911 ~ 6223299 (+) False XLOC_003195

Expression Profile

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