RNA id: TCONS_00062778


Basic Information

Item Value
RNA id TCONS_00062778
length 724
RNA type processed_transcript
GC content 0.49
exon number 5
gene id XLOC_032119
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 31368071 ~ 31429161 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCTAAAGTCTGTTGTGATGCTTGAATGATGGAAAGGGGTAGAAACCAGTCTAGCATGCTGATCATGCATGAccgtgtgttttgtgtgtgtctaCAGAGTGTGTGGACAGGATTCCTTGGATTGCTCCAGAGTGTGTGAAAGACACAGCTAATCTGAGCATAGCGGCTGATAAGTGGAGTTTCGGGACAACTCTTTGGGAGATATGTTACAACGGAGAGATTCCTCTGAAAGATAAGAAACTCACTGAGAAGGAGAGGTTTTACGCAGCGCAGTGTCAGTTGGCAACCCCTGACTGTGATGAGCTGGCCAAACTCATGACCCACTGCATGACTTACGACCCCCGACAGAGGCTCTTCTTCAGGGCCATCGTCAGGGACATTGTTATGGTGGAGAAACAGAATCCATCCATTCAGCCTGTTCCCATGCTTGAAGTGGACCCGACAGTGTTTGAGAAGAGGTTCCTCAAGAAGATTCGAGACCTTGGAGAgGGTCATTTTGGGAAGGTGGAGTTGTGCCGGTATGACCCACGTGGAGATCGGACTGGAGAGCTAGTGGCTGTGAAGTCTCTGAAGCCAGAGAACCGCGAAGAGCAGAGCAATAACCTGTGGCGTGAGATTCACATCCTGAGAGAACTTTACCATGAGAATATCGTCAAATACAAGGGCATCTGCAATGAAGAGGGTGGGAGATCCATTAAGCTCATCATGGAGTTTTTGCCTGC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005856 cytoskeleton cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04217 Necroptosis
ko04550 Signaling pathways regulating pluripotency of stem cells
ko04621 NOD-like receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04380 Osteoclast differentiation
ko05200 Pathways in cancer
ko05203 Viral carcinogenesis
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05212 Pancreatic cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05161 Hepatitis B
ko05160 Hepatitis C
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection
ko05152 Tuberculosis
ko05145 Toxoplasmosis
ko05140 Leishmaniasis
ko01521 EGFR tyrosine kinase inhibitor resistance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-980526-142 Predicted to enable ATP binding activity; metal ion binding activity; and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in cytoskeleton; endomembrane system; and membrane. Is expressed in cranial ganglion; otic vesicle; somite; and vasculature. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia; colorectal cancer; hepatocellular carcinoma; ovarian cancer; and pancreatic adenocarcinoma. Orthologous to human JAK1 (Janus kinase 1).

Ensembl:

ensembl_id ENSDART00000132114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064862 lncRNA upstream 48697 31362348 ~ 31365216 (+) True XLOC_032117
TCONS_00064861 lncRNA upstream 129785 31279331 ~ 31284128 (+) True XLOC_032116
TCONS_00062762 lncRNA upstream 1341669 30048270 ~ 30072244 (+) False XLOC_032106
TCONS_00062761 lncRNA upstream 1396402 29964639 ~ 30017511 (+) False XLOC_032106
TCONS_00064860 lncRNA upstream 1563652 29847250 ~ 29850261 (+) True XLOC_032105
TCONS_00064863 lncRNA downstream 13506 31431127 ~ 31435669 (+) True XLOC_032120
TCONS_00064864 lncRNA downstream 340777 31758398 ~ 31780483 (+) False XLOC_032121
TCONS_00064865 lncRNA downstream 348009 31765630 ~ 31780483 (+) False XLOC_032121
TCONS_00062779 lncRNA downstream 352500 31770121 ~ 31780483 (+) True XLOC_032121
TCONS_00064866 lncRNA downstream 408714 31826335 ~ 31835954 (+) True XLOC_032122
TCONS_00062774 mRNA upstream 705790 30703828 ~ 30708123 (+) True XLOC_032114
TCONS_00062773 mRNA upstream 712706 30689239 ~ 30701207 (+) True XLOC_032113
TCONS_00062772 mRNA upstream 737839 30668098 ~ 30676074 (+) True XLOC_032112
TCONS_00062770 mRNA upstream 820966 30491129 ~ 30592947 (+) False XLOC_032111
TCONS_00062780 mRNA downstream 628581 32046202 ~ 32059110 (+) True XLOC_032123
TCONS_00062783 mRNA downstream 908453 32326074 ~ 32404633 (+) False XLOC_032127
TCONS_00062784 mRNA downstream 908564 32326185 ~ 32340231 (+) False XLOC_032127
TCONS_00062786 mRNA downstream 920713 32338334 ~ 32357279 (+) False XLOC_032127
TCONS_00062787 mRNA downstream 937583 32355204 ~ 32382674 (+) False XLOC_032127
TCONS_00062776 other upstream 48387 31365446 ~ 31365526 (+) True XLOC_032118
TCONS_00062775 other upstream 625869 30787928 ~ 30788044 (+) True XLOC_032115
TCONS_00062767 other upstream 1292044 30120081 ~ 30121869 (+) True XLOC_032108
TCONS_00062766 other upstream 1298502 30113769 ~ 30115411 (+) False XLOC_032108
TCONS_00062763 other upstream 1341669 30070570 ~ 30072244 (+) True XLOC_032106
TCONS_00062785 other downstream 918680 32336301 ~ 32337054 (+) False XLOC_032127
TCONS_00062789 other downstream 975436 32393057 ~ 32403099 (+) False XLOC_032127
TCONS_00062791 other downstream 993227 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062802 other downstream 2123225 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062812 other downstream 2514127 33931748 ~ 33934027 (+) False XLOC_032140

Expression Profile

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