RNA id: TCONS_00006266


Basic Information

Item Value
RNA id TCONS_00006266
length 1812
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_003181
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5666325 ~ 5674923 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTAAATGAGCCACGATGCTCATCTCTACCCAGCTCCCCCGCTAAACGTGTTTCTCCGGCCAAAAAAAAGCagttctttattaatcaggctaTTCGTAACTCGGACCTTATTCCCAGAGCCAAGGGCAAGAAGAGTCAAAGACGACAAGAAAACACTCGTTTTCTGGACAATCTTTTGGAACGAGATGAGTGCTCTAAAGAGGATGGTGAAGGCCATGAAACGGCCTCACCCAGCATCTTCACTGAAGCCTGCACCAATGGAAACTACATGGAGTACTGGAGTGATTTTATGAATCGTTCTGGAGAGGAGCAAGAGCGACTTTTGGCACTCCTAGAGGAGGAGGCTCAGAGGACCCACTCTAACAAAAGCCATAAAGACCAAAGAGAGGTAAATCCTGCCTTCAGCGCTCAGGAATGTTTCCAGAGGATCGATCGGAGGCTGCGCGTGACACTCAAACGCAGACAGATCCCCATAGGAGTGTTGGAGGGTCTAGAGTCCAATCTGCTGGGATTCTTCATGGCACATCCTCACTCGATTTACACAACCAGACTCAGCAGCAGTTATGAGCGACTGTTGCTTCATGCTATTTGCCAGTACATGGATCTGACCTCTGCAAGCTCTGACTGTAATGGTGCTCGACAGACTGAAGTGGTCAACAAACAGGAAGAGTTTCTCCCTCCTCAGCCCCTGCTCTCTGCCTACCTGGAGCAGCTGAACTAAGCTGCTACGAATCGTGGCCTCAACCACCAGTACCACTGCTGTTCATCCAGCCAGACCAGAACAGGCACCACTGCCCTTCAGCTGGCTAGTATGAACTATGCAAAAGGCATTTTATCCTAGGACCTCTCCCTTTAAGAGGCTCCACTGACTAGAGTCATCAATATACTGTCTCTTTCGTTTACTTGCATTTTCTGATGTTTGGGGGCTCATTTTAGTGGACGTTGTTGTTGTTAAACTATCTTTAAATATGATCTGATTCTTTTTCAATGTTCCAGACAGAACTTTTTAGAATATCCTTCATGGAATCTTTGTACACGTATAGAAACATAGCTGTATGTGAACTCGGCCAGAGGAAGAATATGAATTGATGATTATTGTTTTTGGTGTTCTTGACCTTAAAAATCATTGGAAGTGAGTTTAGAAATTCAGGTTCATCTCCATCGCCACACAACCCACATGTAGTCACTGTCGAAAATGTACAGCTCAGGTTTCTACACAAGAACGACTTCATCTAAATCagaggtcaccaaccctgttcctggaggtctaccttcctgcacatttcagttgcaaccgtgaccaaacacacctgtttgtaattatcaagtgccgCTTTAGgaactattaattggttcaggtgtgtttgatcagggttgggactgaattgtgcaggaaggtagctctccaggaacagggttggtgacccctgatctaaatagTGCTAATATTGCAAATCTTATGGTAAATGGTTGTACCTTTGCAAGCTCTTTATCTTACTGCACAATATTGAACTAGTTATTCTTTAGACTTGATTCCATTAAATCAGCCAATCCTGCCTGACAGTTAAAGAGAAATGAGAAGACCTTTTATATCCAGCATTCTATGCCTTGAAGTCAAACTCAACCTGTGTTTTTAATCTGCCATTTGCAGGTGTCGCATGTTAAAACGCGTTTTATTTCCAAATTAGGATTTGCCAACATGCACTTACAACTATGCCTTACCTGTACACACCATATTTGtcatttttgtatgtatataataGCCTTTACATCAATGTTATGGTTTACACACAAggaaaataatgtaatgttt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1352 Predicted to enable nucleic acid binding activity. Orthologous to human R3HDM4 (R3H domain containing 4).

Ensembl:

ensembl_id ENSDART00000092270

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008384 lncRNA upstream 63604 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00008383 lncRNA upstream 176617 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008382 lncRNA upstream 188642 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006257 lncRNA upstream 1579474 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008519 lncRNA upstream 1883200 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006271 lncRNA downstream 167754 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 212763 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00008520 lncRNA downstream 280342 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA downstream 280363 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00008523 lncRNA downstream 280364 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00006265 mRNA upstream 6644 5588122 ~ 5659681 (+) True XLOC_003179
TCONS_00006264 mRNA upstream 78173 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006263 mRNA upstream 82498 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006261 mRNA upstream 150403 5499661 ~ 5515922 (+) True XLOC_003177
TCONS_00006259 mRNA upstream 173134 5468629 ~ 5493191 (+) False XLOC_003175
TCONS_00006267 mRNA downstream 6839 5681762 ~ 5810958 (+) True XLOC_003182
TCONS_00006268 mRNA downstream 142279 5817202 ~ 5836286 (+) True XLOC_003183
TCONS_00006269 mRNA downstream 167709 5842632 ~ 5852715 (+) False XLOC_003184
TCONS_00006270 mRNA downstream 167740 5842663 ~ 5852595 (+) False XLOC_003184
TCONS_00006272 mRNA downstream 205639 5880562 ~ 5923047 (+) False XLOC_003185
TCONS_00006262 other upstream 134749 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 184441 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 1698016 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2152217 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2489555 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006273 other downstream 205652 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 359319 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 461398 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 534247 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 534988 6209911 ~ 6223299 (+) False XLOC_003195

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_03752329_03758938.mRNA True 1765 mRNA 0.39 7 CI01000057 3751404 ~ 3759109 (+)