RNA id: TCONS_00062815


Basic Information

Item Value
RNA id TCONS_00062815
length 2646
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_032144
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34038963 ~ 34073164 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTACAAACCCGGAAGACTCGCGTGTTAGGGATGGGGAATATCTTTCGGCATTTCAGCTGATTAAACTTTAGGAAAATTTGCTAAACTTCGACACCTGTCAGTTAGTTCTTGTCATCCAACACCTTTGACGAGGATGGCCGCGTCCGCGATCTTCATCCTGGACCTGAAAGGCAAGGTGCTCATATGTCGCAACTACATGGGCAACATTGACATGAACGTGATAGACAACTTCATGCCGATAATGATGAAGAGAGAGGAAGAAGCAGAGTTGTCACCAGTTGTTATTCACGGCTCCACACATTTCCTCTGGATCAAGCACAGCAACCTGTACTTGGTTGCGATGACAAAGAAAAACACCAATGCTGCTCTTGTATACTCCTTCCTGTACAAATTAGTGGAGGTTTTCACTGAATATTTCAAATCACTTGAAGAAGAGAGCATTAGAGACAATTTCGTGACAGTATATGAGCTAATGGATGAAGTCATGGACTTTGGATTCCCTCAAACCACTGACAGCAAGATCTTGCTAGAGTATATTACTCAGCAGGGGCACAAGCTGGAGGTTGGCGCACCAAGACCCCCTGCTACAGTGACCAATGCTGTGTCCTGGAGGTCAGAGGGCATCAAGTACAGGAAAAATGAAGTCTTCATGGATGTCATTGAGTCTGTCAATCTTTTGGTCAGTGCTACGGGCAGCGTTCTGCGGAGTGAGATTTTGGGATGCATCAAACTCAAAGTCGTTCTGTCAGGCATGCCTGAATTAAGGCTTGGACTCAATGATAAAGTGCTCTTTGAAATCACCGGACGAGAGAAGACAAAGTCTGTTGAGCTTGAAGATGTTAAGTTTCATCAGTGTGTGCGTCTGTCTCGCTTCGAAAATGACCGGACCATCTCTTTCATCCCACCTGATGGAGAATCTGAGCTCATGTCTTATCGGCTCAACACCACGGTGAAGCCTCTAATATGGATTGAGAGCGTAATAGAGAAGTTCTCTCACAGTCGAGTAGAGATCAAGGTTAAGGCCCGCAGTCAGTTCAAGAGCCGCTCCACTGCCAATAATGTGTCCATCTTAGTTCCTGTTCCCAGTGATGCTGATTCACCCAAATTCAAGACCACCACAGGACAGGCCAAATGGGTTCCTGAGAAAAGTGCTGTGGAGTGGAACATCAAGTCCTTCCCTGGTGGAAAGGAGTTCATGATGCGAGCTCATTTTGGACTGCCGAGTGTTGAAAGTGATGAACTGGAGGGCAAGAGACCTATCACAGTCAAGTTTGAGATTCCTTATTTCACAGTGTCCGGCATACAGGTGCGATACTTGAAGATTATTGAGAAGAGCGGATACCAGGCACTACCGTGGGTGCGTTATATCACTCAGAGTGGAGATTATCAACTGAGGACCAACTGAGAGAGGACAGCTTCGGTGTGTGTTGTGTCTTTTGTCGGTCCTGTTTCATCAGTCAGACAGACATCGCCTTCACACAGCAGTTGGACATCTCTACCTTCTCCTTTGCTTTCACCTCAGATCAGGTTTTACTAATTTAACAAGGAAGTTGGACAGCAAAGTTACTGAGAAACTCCTATGGAACTattgattttaaattataatcCAGAGGTTGTGTTACAGAGCTATAATCTATTGATATTTgtaccctcatgttgttccaaacctgtgtatgttttctccatttaaacacacactcaaaatctataataaaaaagtcaacggggtggcacggtggcttagtgattagcactgttgccttacagcaagaaggttgctggttcgagtcctggctggctgtgtggagtttaaatgtTGTCCTCATTTTTGTGTGAGtttgctccaggtgctccggtttcccccacaatccaaacataTTCGGTATAggggaatttaataaactaaattggccatagtgtatgagtgtttgtgtgtgtgaatgtgagagtgtatgggtgtttcccagtattgagttgaggctggaagggcattagcagcgtaaaacaaatactgtaatagttgaggttcattccgctgtggcgacccctgataaataagggactaaactcaaggaaaatatgaatgaatgaaagtcaataGAGTTGTTGTTTTGGATTCTTTTGACTTTCATTTCATggacaaaatataataaaacattaataatatctTTGTATATGCTTCAcagaaaaatttatatttaaaaagggTCAGGGTTGTTATTGTTAAACTTTTTGCTTATCaatgctatgaaagtcaatggtgttCAGGGTTGTTTTTTTGGACTCCACTGACTTTGAAAGTACAGATAAAATCAATGAAatccttaaaaatatatatttttaaatttttcacaGGAAAACATAACTAAACCAAAAACCCAAACCGGAAACACTTTATAGTAACTGCACACTATGATTcataaatataatatgataaatagTTAAATTATAATTTGTTAAGCATTCGTTCTTCATTAACAGATGTTAACCACAGATACATATGCTCTGTTCTTGACTTGTAAcccatttaaaatgtgcttaatgattgcaTTTccatactttattattttttcattactaaattaagtatcacattatttacgaACCAGTTATTTAAGTGAAGTTAGtggtttttaaagattat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0007420 brain development biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0030136 clathrin-coated vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-159 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in cerebellum; hindbrain; midbrain; midbrain hindbrain boundary; and somite.

Ensembl:

ensembl_id ENSDART00000057732

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064665 lncRNA upstream 54298 33983869 ~ 33984665 (+) True XLOC_032142
TCONS_00064870 lncRNA upstream 56469 33981639 ~ 33982494 (+) True XLOC_032141
TCONS_00062803 lncRNA upstream 203782 33813288 ~ 33835181 (+) True XLOC_032137
TCONS_00062804 lncRNA upstream 218984 33817691 ~ 33819979 (+) True XLOC_032138
TCONS_00064664 lncRNA upstream 757927 33280353 ~ 33281036 (+) True XLOC_032135
TCONS_00064666 lncRNA downstream 112509 34185673 ~ 34186594 (+) True XLOC_032145
TCONS_00062817 lncRNA downstream 369245 34442409 ~ 34484743 (+) False XLOC_032146
TCONS_00064667 lncRNA downstream 401727 34474891 ~ 34509903 (+) False XLOC_032146
TCONS_00064668 lncRNA downstream 411402 34484566 ~ 34505546 (+) False XLOC_032146
TCONS_00062818 lncRNA downstream 414612 34487776 ~ 34505546 (+) False XLOC_032146
TCONS_00062814 mRNA upstream 2732 34028532 ~ 34036231 (+) True XLOC_032143
TCONS_00062809 mRNA upstream 88046 33931095 ~ 33950917 (+) False XLOC_032140
TCONS_00062811 mRNA upstream 91084 33931740 ~ 33947879 (+) False XLOC_032140
TCONS_00062810 mRNA upstream 91084 33931740 ~ 33947879 (+) False XLOC_032140
TCONS_00062808 mRNA upstream 128005 33898293 ~ 33910958 (+) True XLOC_032139
TCONS_00062820 mRNA downstream 438722 34511886 ~ 34805795 (+) False XLOC_032147
TCONS_00062821 mRNA downstream 439149 34512313 ~ 34811508 (+) True XLOC_032147
TCONS_00062822 mRNA downstream 794992 34868156 ~ 34895175 (+) False XLOC_032148
TCONS_00062823 mRNA downstream 797210 34870374 ~ 34894863 (+) True XLOC_032148
TCONS_00062824 mRNA downstream 835433 34908597 ~ 34920826 (+) False XLOC_032149
TCONS_00062813 other upstream 97121 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 104936 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 488461 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 1623109 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062789 other upstream 1635864 32393057 ~ 32403099 (+) False XLOC_032127
TCONS_00062831 other downstream 1721635 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062848 other downstream 2392183 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 2399557 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 2438648 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 2917406 36990570 ~ 36990684 (+) True XLOC_032171

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_06327907_06340628.mRNA True 1706 mRNA 0.45 11 CI01000340 6327486 ~ 6340644 (+)