Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006271 |
| length | 849 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_003184 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 5842632 ~ 5852715 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009060 | aerobic respiration | biological_process |
| GO:0032981 | mitochondrial respiratory chain complex I assembly | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0015990 | electron transport coupled proton transport | biological_process |
| GO:0005747 | mitochondrial respiratory chain complex I | cellular_component |
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003954 | NADH dehydrogenase activity | molecular_function |
| GO:0051536 | iron-sulfur cluster binding | molecular_function |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | molecular_function |
| GO:0048038 | quinone binding | molecular_function |
| id | description |
|---|---|
| ko00190 | Oxidative phosphorylation |
| ko04723 | Retrograde endocannabinoid signaling |
| ko04714 | Thermogenesis |
| ko05208 | Chemical carcinogenesis - reactive oxygen species |
| ko05010 | Alzheimer disease |
| ko05012 | Parkinson disease |
| ko05014 | Amyotrophic lateral sclerosis |
| ko05016 | Huntington disease |
| ko05020 | Prion disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko05415 | Diabetic cardiomyopathy |
| ko04932 | Non-alcoholic fatty liver disease |
| id | description |
|---|---|
| ZDB-GENE-041111-261 | Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in aerobic respiration; electron transport coupled proton transport; and mitochondrial respiratory chain complex I assembly. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including eye; immature eye; musculature system; optic tectum; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 3. Orthologous to human NDUFS7 (NADH:ubiquinone oxidoreductase core subunit S7). |
| ensembl_id | ENSDART00000164965 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008384 | lncRNA | upstream | 239956 | 5602340 ~ 5602721 (+) | True | XLOC_003180 |
| TCONS_00008383 | lncRNA | upstream | 352969 | 5486647 ~ 5489708 (+) | True | XLOC_003175 |
| TCONS_00008382 | lncRNA | upstream | 364994 | 5476848 ~ 5477683 (+) | False | XLOC_003175 |
| TCONS_00006257 | lncRNA | upstream | 1755826 | 4026279 ~ 4086851 (+) | True | XLOC_003173 |
| TCONS_00008519 | lncRNA | upstream | 2059552 | 3771266 ~ 3783125 (+) | True | XLOC_003170 |
| TCONS_00006276 | lncRNA | downstream | 39614 | 5887686 ~ 5889156 (+) | True | XLOC_003185 |
| TCONS_00008520 | lncRNA | downstream | 107193 | 5955265 ~ 5966389 (+) | False | XLOC_003187 |
| TCONS_00008521 | lncRNA | downstream | 107214 | 5955286 ~ 5966389 (+) | False | XLOC_003187 |
| TCONS_00008523 | lncRNA | downstream | 107215 | 5955287 ~ 5966389 (+) | False | XLOC_003187 |
| TCONS_00008522 | lncRNA | downstream | 107215 | 5955287 ~ 5966389 (+) | False | XLOC_003187 |
| TCONS_00006268 | mRNA | upstream | 6391 | 5817202 ~ 5836286 (+) | True | XLOC_003183 |
| TCONS_00006267 | mRNA | upstream | 31719 | 5681762 ~ 5810958 (+) | True | XLOC_003182 |
| TCONS_00006266 | mRNA | upstream | 167754 | 5666325 ~ 5674923 (+) | True | XLOC_003181 |
| TCONS_00006265 | mRNA | upstream | 182996 | 5588122 ~ 5659681 (+) | True | XLOC_003179 |
| TCONS_00006264 | mRNA | upstream | 254525 | 5565082 ~ 5588152 (+) | False | XLOC_003179 |
| TCONS_00006272 | mRNA | downstream | 32490 | 5880562 ~ 5923047 (+) | False | XLOC_003185 |
| TCONS_00006274 | mRNA | downstream | 32510 | 5880582 ~ 5923047 (+) | False | XLOC_003185 |
| TCONS_00006275 | mRNA | downstream | 32555 | 5880627 ~ 5925517 (+) | False | XLOC_003185 |
| TCONS_00006277 | mRNA | downstream | 78778 | 5926850 ~ 5931622 (+) | True | XLOC_003186 |
| TCONS_00006278 | mRNA | downstream | 161912 | 6009984 ~ 6037712 (+) | False | XLOC_003188 |
| TCONS_00006262 | other | upstream | 311101 | 5531443 ~ 5531576 (+) | True | XLOC_003178 |
| TCONS_00006260 | other | upstream | 360793 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
| TCONS_00006254 | other | upstream | 1874368 | 3965727 ~ 3968309 (+) | True | XLOC_003171 |
| TCONS_00006246 | other | upstream | 2328569 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006233 | other | upstream | 2665907 | 3176686 ~ 3176770 (+) | True | XLOC_003159 |
| TCONS_00006273 | other | downstream | 32503 | 5880575 ~ 5923741 (+) | False | XLOC_003185 |
| TCONS_00006283 | other | downstream | 186170 | 6034242 ~ 6037553 (+) | True | XLOC_003188 |
| TCONS_00006299 | other | downstream | 288249 | 6136321 ~ 6144643 (+) | True | XLOC_003192 |
| TCONS_00006305 | other | downstream | 361098 | 6209170 ~ 6223299 (+) | False | XLOC_003195 |
| TCONS_00006306 | other | downstream | 361839 | 6209911 ~ 6223299 (+) | False | XLOC_003195 |
