RNA id: TCONS_00062825


Basic Information

Item Value
RNA id TCONS_00062825
length 2379
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_032149
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34908597 ~ 34925690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATCTTGCAGGAACTGTATGCACCGTAAGGTCAAGCACAGGCAAAGAAGTTCTCTTAGGTTCCAACTTCACCGTCTCCTGCATCTTCAACAAGCCATGCACTAAACAATTGTTTCGGAATAATGAGCCAATCAAGTATGAGCTATCTCCCAGGTCAAGAGAGGTGTTTGTGTATATTAGGAATTTAACAACGTTGAGCATCTTTACCTGCAAGTGTAATGACAACCCAGAGCCTTGCGGAATTGACATCACTCCAGGATACCCTCCAAACTTTCCGCAAAATCTCACCTGTATACGAAAAACGGAATTTGGCAATGTTAGTTGCACTTGGACAACAGGAAGGGATACCAAAATTGTGACCACATGTCAATTACGGGTTCAAGGTGATCCACACCATGGCTATGAGAGTGTTATGAACTCTTCAGGATTTTGTTGGGCCACATTCCCTATCAAAAGCCGAATGTCACAACTAACTGTGTCACTCAATGTCTCTAATAGCCTGGGCTCAAATACCTCAGTACAACCATCATTACCGAAAATCAAGCATGTGGACTGCTCCTCCCGATGGTGCCACCTACACACTGACAACCACAGCATGAACTTAGTGGAAGTCCAATACAAATCGCCAAAAGGCATCTGGAAGAAAGTTCAGATCAATGGTAAGAAAAGTTTAAACATATCCTTGCTGGAGCCATATACAAAATACATGTTTCAGATCAGGAGGAAAATAAACCAAACCATGGGTCTGTGGAGTTACTGGAGTCAAGCAAAGGAAGCAGAAACCAAAGAAGaagCTCCTGACAAGGTCCTTGACTTCTGGTACCTCCGAGAACTGAAACCTTCACAAAGTGAAAAGTGTTTCCGCATATTTTGGAAGgAATTAAGTGTGTCAGATGCCAAGGGGAAAATCCATCAGTATGATATAACTGTGAAGAAGGGGAACTCAAGAGAAATCATTGTAGTTCCACGCCGAATAAATGAGAGCATATGCTGCTCTGACTGCTCTGTTTCAGTCTCCGCAGTGAACTCAATGGGTCAATCTCCTGAAAATTTCATTAAGCTTCAGACTCCACATCTCGTTTCAGGTTTCCTGTCCCATAAGTCATTGAGCAATCATAGCATTGCCCTCTCCTGGCCGAGGCTTGCCATTGCAGGCAATATAACAGAGTATGTGGTGCATTGGTATCCTGTTGGAGACATTGAAGAGATTCAGTGGATTAGGGTGGTGGACACGAAAGCCAATATTACCGGTCTACGGCCTCAAGAATGCTTTCAGGGTGCTGTTACAGCTCTGACCTCAAATGGTCCTGTGGCATCTAATAAAGACCTCTCCACATGGCAGTCAGCTCCAGAACAGGGTCCGGTTCCTCAACAAGTGAAGAAGAAGACTGAGAGTTTAATAGTAAAATGGTCTAAAATTCCTCAAGAAAAGAGAGGAGGCTGTTTGAAAAAATACACAGTCTACTTGATGGACAAGTCGAAGGGGGAAATACACCATTACAGTGTGGACTATCCATTGACAGAGTATATCATCAGTGGTTTGTCACCTGGGCAGTGCTACAATCTGTGGGTCACGGCCTGGACAGATGCTGGAGAGGGACCCAGAGGAAGTGATCTCCCATTCTGCACACCAACAGATACAGAGAGACTACTTTCCCTTGTGATCTTGGCTGGTGGAGCAGTACTCTTTTTCTGTCTTTTCCTCATCTGCATCTGTCAGTTCTCCTCTGTTCAGAGACGATTCCTAAGTTGTTTCCAGTGTCTGCTGCCTAGAGTTATTCCAGATCCAGCAAACAGCAAATGTGCAAAGACTTATGACAAGCACCCCTCACAAAGCttgatccacactggcgtttctcCTCTTggttttttggttttgaaaagggacaAAAATTCCACCCATCacgtccaaactttaaggataacaggtatcagatttgcacaatccatatgcactcgcTTGAAagagcccctgcgcgtagctacagttgctaagccacgattgGAAATTCTATTCTATCTTCAACAATATGACTCCAGCATGAGCGAGGAGCCTGAAAATGTGGAAGTGGAGGAAGTGCCCTATCACCCCAGCTTCACCTGCACCTACATCAAAAGCTTCTCTCAAGAGTCTGACTCCTCTGATGCCACGCAGATCACCAGGAACACGGACATCTCCGAGGACTACATCTCCACACACGGAGCAATAAGtggaggagaggaggaggaggacgaggaAAAAGAGATGGGTTTGGATGAATTTGAATTCTTCCCAAGCATTCGCAGCCCTTTCTTGGAGCCCCTGGTTTCGACTGGAGGGAAGCTGACACTGGACGTGGTGAAAATAGACTGCAGTGAATTCCTTGATTGCACATGA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04658 Th1 and Th2 cell differentiation
ko05200 Pathways in cancer
ko05321 Inflammatory bowel disease
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-080107-3 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human IL12RB2 (interleukin 12 receptor subunit beta 2).

Ensembl:

ensembl_id ENSDART00000016388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062819 lncRNA upstream 398461 34487776 ~ 34510136 (+) True XLOC_032146
TCONS_00064667 lncRNA upstream 398694 34474891 ~ 34509903 (+) False XLOC_032146
TCONS_00064668 lncRNA upstream 403051 34484566 ~ 34505546 (+) False XLOC_032146
TCONS_00062818 lncRNA upstream 403051 34487776 ~ 34505546 (+) False XLOC_032146
TCONS_00062817 lncRNA upstream 423854 34442409 ~ 34484743 (+) False XLOC_032146
TCONS_00064871 lncRNA downstream 16915 34942605 ~ 34943518 (+) True XLOC_032150
TCONS_00064872 lncRNA downstream 52010 34977700 ~ 34980647 (+) True XLOC_032151
TCONS_00062830 lncRNA downstream 458501 35384191 ~ 35393308 (+) True XLOC_032154
TCONS_00064873 lncRNA downstream 868967 35794657 ~ 35824376 (+) False XLOC_032155
TCONS_00064669 lncRNA downstream 990563 35916253 ~ 35946727 (+) False XLOC_032156
TCONS_00062822 mRNA upstream 13422 34868156 ~ 34895175 (+) False XLOC_032148
TCONS_00062823 mRNA upstream 13734 34870374 ~ 34894863 (+) True XLOC_032148
TCONS_00062821 mRNA upstream 97089 34512313 ~ 34811508 (+) True XLOC_032147
TCONS_00062820 mRNA upstream 102802 34511886 ~ 34805795 (+) False XLOC_032147
TCONS_00062815 mRNA upstream 835433 34038963 ~ 34073164 (+) False XLOC_032144
TCONS_00062826 mRNA downstream 127031 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062827 mRNA downstream 127150 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062829 mRNA downstream 436535 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA downstream 436535 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062845 mRNA downstream 1456019 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062813 other upstream 966755 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 974570 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 1358095 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 2492743 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062789 other upstream 2505498 32393057 ~ 32403099 (+) False XLOC_032127
TCONS_00062831 other downstream 869109 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062848 other downstream 1539657 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 1547031 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 1586122 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 2064880 36990570 ~ 36990684 (+) True XLOC_032171

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_06677894_06691556.mRNA True 2337 mRNA 0.45 15 CI01000340 6677894 ~ 6691569 (+)