RNA id: TCONS_00006276


Basic Information

Item Value
RNA id TCONS_00006276
length 383
lncRNA type retained_intron
GC content 0.46
exon number 4
gene id XLOC_003185
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5880562 ~ 5925517 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAAAGACCCCAATTGCGTACGCACGGTCCTGGACACCAAACCTCATAACCTGGATGGAAGAAATATCGACCCAAAGCCTTGTACACCGAGAGGTATGCAGCCCGAGAAGACCCGGACAAAAGACGGCTGGaaaggaaGCAAAAGTGACAGTAATAAATCTAAGAAGATATTTGTGGGTGGAATACCTCATAATTGCGGTGAAGCTGAACTCAGGGATTACTTCAACCGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCAGAGAAACAGAGGCCTCGAGGTAAACCACACATTCATATTTGCTCCCATTCAGTCTCTCTCACCTCATCCGCAAGACAAACTATTCCAACCCAAAGAGAAGCGAACATCACGCA

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0034046 poly(G) binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070212-1 Predicted to enable mRNA 3'-UTR binding activity; poly(G) binding activity; and poly(U) RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Is expressed in Purkinje cell. Orthologous to human DAZAP1 (DAZ associated protein 1).

Ensembl:

ensembl_id ENSDART00000142935

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006271 lncRNA upstream 39614 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00008384 lncRNA upstream 284965 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00008383 lncRNA upstream 397978 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008382 lncRNA upstream 410003 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006257 lncRNA upstream 1800835 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008520 lncRNA downstream 66109 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA downstream 66130 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00008523 lncRNA downstream 66131 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00008522 lncRNA downstream 66131 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00008524 lncRNA downstream 66132 5955288 ~ 5966389 (+) False XLOC_003187
TCONS_00006269 mRNA upstream 34971 5842632 ~ 5852715 (+) False XLOC_003184
TCONS_00006270 mRNA upstream 35091 5842663 ~ 5852595 (+) False XLOC_003184
TCONS_00006268 mRNA upstream 51400 5817202 ~ 5836286 (+) True XLOC_003183
TCONS_00006267 mRNA upstream 76728 5681762 ~ 5810958 (+) True XLOC_003182
TCONS_00006266 mRNA upstream 212763 5666325 ~ 5674923 (+) True XLOC_003181
TCONS_00006277 mRNA downstream 37694 5926850 ~ 5931622 (+) True XLOC_003186
TCONS_00006278 mRNA downstream 120828 6009984 ~ 6037712 (+) False XLOC_003188
TCONS_00006279 mRNA downstream 121021 6010177 ~ 6037739 (+) False XLOC_003188
TCONS_00006280 mRNA downstream 121021 6010177 ~ 6037759 (+) False XLOC_003188
TCONS_00006281 mRNA downstream 121035 6010191 ~ 6022597 (+) False XLOC_003188
TCONS_00006262 other upstream 356110 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 405802 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 1919377 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2373578 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2710916 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006283 other downstream 145086 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 247165 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 320014 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 320755 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 438822 6327978 ~ 6328093 (+) True XLOC_003199

Expression Profile

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