RNA id: TCONS_00062845


Basic Information

Item Value
RNA id TCONS_00062845
length 1983
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_032159
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36381709 ~ 36391687 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGTTACTATTGAAAGCAACAGACTAAATTAACAAGAAAGGCATTTGACTGTCATTTCCACAACATCTGTTCGGGAGAATCTGCAAGATCAAAAATGGTCAAAAACACCAATATTCGAATCAGTCTCCCTGCGGTTTGCTTTGTCTGGCAGATTGCTATGATCATCCTGTTTGGTGTGTTCATCCGTTATGATGAGGAGTCTGACAGCCATTGGATCGAAACACGGAAAAAGAACAATATTTCCACTGATTTAGAGAATGACTTTTACTATAGATATCCAAGTTTTCAGGATGTGCATGTGATGATCTTTGTTGGTTTTGGATTCCTCATGACCTTTCTGAAGCGTTACAGTTTTGGTAGTGTTGGATTTAATTTTCTCATCGCAGCCTTTGGCATTCAATGGGCTCTGCTGATGCAAGGCTGGTTTCATTCCTTTGACAAAGAGGACTTGAAGATAAAAATCGGCGTTGAGAACCTCATCAACGCAGATTTCTGTGTGGCTGGTTGTCTCATTGCATATGGTGCTTGTCTTGGAAAAGTCAGTCCTGTACAACTGATGGTTCTTACTCTGTTTGGAGTCACTCTGTATGCAGTTGAAGAGTACATCATTCTCTATGTCCTTCATGTGAGAGATGCTGGTGGTTCTATGGTCATCCACACCTTTGGTGCATATTACGGTTTAACCATATCTTGGGTCTTGTATCGACCATTTCTGTCTCAAAGCAACCATTTACAACGATCTGTATACCACTCTGATGTATTTGCAATGATTGGCACTCTGTTTCTTTGGATGTTCTGGCCaagttttaattcagcaattgCGGATCATGGAGATGGCCAGCATCGAGCTGCTATAAACACTTACCTATCCCTGGCCGCATCGGTTCTCACTACCTTTGCCCTTTCCAGTCTCTCAAAGAAATATGGAAAACTCGACATGGTACATATTCAGAATGCTACCTTGGCTGGTGGTGTAGCGATGGGAACGGCTTCAGAGTTCATGATTACACCTTACGGCTCTCTGATAGTGGGATTCTGTTCGGGTATTGTCTCCACCCTTGGATATGTCTTTCTGACTCCTTTAATGGAAAAAACCTTGAAGATACAAGATACCTGTGGTGTACATAACCTTCATGCAATGCCTGGAGTTATTGGTGGAATTGTTGGAGCTGTTACTGCAGCTTGTGCCAGTGAATCTGTTTATGGACATGAAGGactgatTAACATGTTCGGATTTGAGGGTAAAGTGAACAGAACAGCCAGCGTTCAGGGAGGATACCAGGCGGCAGGTATCTTTGTAGCAATAGCATTCGGCCTTGTGGGAGGAGCTTTGGTTGGTGGCATACTAAAGCTGCCAATCTGGGGAGACCCAACAGACAGCAACTGCTTTGATGATGATATTTACTGGGAGGTTCCAGAGGAAGAGGATGAAAATATTCCTGCTTTTGGACATCAAAACATGCATCATGTAGAAAGGACGCCAGATGCACATCACCGAAGTCATGTGTAAGGGGGCAACACAACAACAGCAACCTGAAAAGTTCTACATCTAAAAAAATGAAGATGGAATAGGAATCATGGAGGCTTCAAAGATTGATTAGACAAGCTACTCAATGGAAAATTTTAAGTTTGTCATGTGACAAGATGTGATGTGTGTTAGTCAATGTCATAATCTTCAAGAATCTTCTATGTAGCACCAGACTAACCAGTGCTGCCACTGCTACTTCAGCaaaaacaatttcaaaaagtCCTCATGGCTTTATTTCCTTTTTGAATTCTTTGCATTCCAACACCAGCGATCTGACACTTCACCTTTTCTTTGTCTGGAAAATAactatattaatacaattttaagaCTGTCATACctttttttatacacttttatacTGATAATAATCATCATATAATGAATCTGTTCAGACTAAAGAAACATTAGAattgttaaactaaaaaaatatgcctaaagctgataaaaaaaaaa

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015696 ammonium transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060209-2 Predicted to enable ammonium transmembrane transporter activity. Acts upstream of or within ammonium transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in ball; gill; gill filament; pharyngeal arch 3-7; and pigment cell. Orthologous to human RHCG (Rh family C glycoprotein).

Ensembl:

ensembl_id ENSDART00000004727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062837 lncRNA upstream 96598 36281273 ~ 36285111 (+) False XLOC_032158
TCONS_00062844 lncRNA upstream 96607 36282487 ~ 36285102 (+) True XLOC_032158
TCONS_00062843 lncRNA upstream 96779 36282472 ~ 36284930 (+) False XLOC_032158
TCONS_00062836 lncRNA upstream 96839 36281273 ~ 36284870 (+) False XLOC_032158
TCONS_00062841 lncRNA upstream 97003 36281727 ~ 36284706 (+) False XLOC_032158
TCONS_00064886 lncRNA downstream 23036 36414723 ~ 36415086 (+) True XLOC_032160
TCONS_00064887 lncRNA downstream 80898 36472585 ~ 36540735 (+) False XLOC_032162
TCONS_00064888 lncRNA downstream 80934 36472621 ~ 36476697 (+) False XLOC_032162
TCONS_00064889 lncRNA downstream 80934 36472621 ~ 36618498 (+) False XLOC_032162
TCONS_00064890 lncRNA downstream 80942 36472629 ~ 36573471 (+) False XLOC_032162
TCONS_00062829 mRNA upstream 1014765 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 1014765 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 1320242 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 1320772 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062825 mRNA upstream 1456019 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062846 mRNA downstream 68210 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA downstream 68275 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062851 mRNA downstream 403538 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 429934 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062855 mRNA downstream 447822 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062831 other upstream 586090 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2439867 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 2447682 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2831207 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 3965855 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062848 other downstream 73660 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 81034 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 120125 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 598883 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 802221 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU563446 True 3470 lncRNA 0.38 10 CI01000340 7451153 ~ 7456580 (-)