RNA id: TCONS_00062856


Basic Information

Item Value
RNA id TCONS_00062856
length 905
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_032167
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36839509 ~ 36844020 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGAAGGGAGATGAAGTTAAAGGTGAGCAGTGATGTCGTGCGAGAGTGCCTGTTGAACGATGATACAACACATTCTCAGAGATTTGGAGTGAATTAATTAGTGGATATAAAGAATTAAGAGTTCAATAATGGACAAACTCAGAGCGGTTCTGGGTGGTCGGGATGGAAACAATGATAACAGGAACATACTGCAGGCGGCGAATGAAGCGTCCACACTGGGATGGGGAACGCGCGTGAAAGGATTCGTTGGTTGTTTGGTCGTTGGAGTAGTGTTCTCTATCTTGGGAGTAGGTTGCCTGTTTATTCCCAAAATTGGGATACttctttttgttgtgttttatacatTGGGAAACGTTTGCTCCTTAGCAAGCACCATGTTTTTAATGGGACCAGTGAAACAGCTGAAACGCATGTGTGACAAGACCAGAGCCTTTGCTACTGTTGTGATGATAACATGTCTGGTTCTCACACTCTGTGCAGTATTTTGGTGGAAGATCTTTGCTCTCACTCTGCTGTTTGTCATTCTTCAAGTCCTTGCATTTGCATGGTATGGCCTCTCATACATCCCTTTTGCAAGGGATGCTGTACTGAAGTTTTTCTCCATGTTGTGCAACATGTGTATGAAATGAAGAGCTGATGTTTATCCTTTCATCACTCTGGGAACTGGGAACACTCTGCTCAAGTATTCTGCAATTCTGGGGTCCACAAATAATCACTGAGACTATGGGATGGTGCTAGTTGTAATCGCTAACGTTAGCTGGACGACATGCTAAATCTGACTGTACAAAAGATTACATTTTActgaatgtgttttaaatgtgttgtaaaaCAGATTTGTAAATGTTATGAAATGTCTTAAAATTGATATTTATTAAAGTAGATATTGCAGTTATATACTAAAAA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050227-13 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in spinal cord. Orthologous to human SFT2D2 (SFT2 domain containing 2).

Ensembl:

ensembl_id ENSDART00000104160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062852 lncRNA upstream 20261 36807804 ~ 36819369 (+) False XLOC_032165
TCONS_00062853 lncRNA upstream 21447 36817148 ~ 36818183 (+) True XLOC_032165
TCONS_00064674 lncRNA upstream 125008 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00064893 lncRNA upstream 221132 36472672 ~ 36618498 (+) False XLOC_032162
TCONS_00064892 lncRNA upstream 247422 36472672 ~ 36592208 (+) False XLOC_032162
TCONS_00064894 lncRNA downstream 340306 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064895 lncRNA downstream 340306 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00064896 lncRNA downstream 340312 37184199 ~ 37217476 (+) False XLOC_032172
TCONS_00064897 lncRNA downstream 340420 37184307 ~ 37247650 (+) False XLOC_032172
TCONS_00064898 lncRNA downstream 340448 37184335 ~ 37247650 (+) False XLOC_032172
TCONS_00062854 mRNA upstream 2094 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062851 mRNA upstream 20671 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062846 mRNA upstream 375935 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA upstream 377399 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062845 mRNA upstream 447943 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062857 mRNA downstream 240 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062858 mRNA downstream 34081 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062859 mRNA downstream 34928 36878815 ~ 36901130 (+) True XLOC_032169
TCONS_00062860 mRNA downstream 99079 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062863 mRNA downstream 457454 37301341 ~ 37307487 (+) False XLOC_032173
TCONS_00062849 other upstream 297528 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 327700 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 366682 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062831 other upstream 1044011 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2897788 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062861 other downstream 146683 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 350021 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062866 other downstream 490672 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 871385 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 1243608 38087495 ~ 38087611 (+) True XLOC_032184

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_07698442_07700739.mRNA True 242 mRNA 0.48 4 CI01000340 7698442 ~ 7700739 (+)