RNA id: TCONS_00062867


Basic Information

Item Value
RNA id TCONS_00062867
length 1991
RNA type mRNA
GC content 0.43
exon number 11
gene id XLOC_032177
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37441789 ~ 37454910 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAGAGAAGAAGATGGATCAAAACATGCACACGGAAACTCATCATTAGTGTGTTAGTTAAGTCAAACAAATTGCTTTCTGGAATATTTTGCTTTATGTGCGTTTAGCGTTCAATGTAAAGGTAACGTTCAATGATTTGgctgtttattattttgtaacataaaCCTGAAAAAAATGAATCTGAACAAAATCAGTGTCTTGACCAGACATGTGTTTTTATGCAAACATGTTCTGAGCAGGTCATACGTGAGATTTGCTAAATGTGAAGTAGTCAGATTTCCTCAGTGTGCCTCAAAATTAATTGTAAACACATTACCATCCCAAAGTTTAAAGCCTGGGCTTGTGGTTCCAGTTCTGCCTGCAAGGACtttgtctttgacagctcgcatGTTCAAATATGACAACACAGATGACAATAATGTAGAGGAAGATGAAATTGATGACGCAGAAATAGAGAAGCTGTTTCAGGAGCAAATCCCCTCTGGTATTGGTAAAGAAGACCACAGGGTCTTCATTGTTCACCCAGATGTAAAATGGGGGAGCAGAAAGCAATATCTGACCACAGCGGCACTTCAGATGGAAGAGGCTGTTGGCCTGGTGAAAACTTTACACAAGTGGAGTGTTGTTGATAAGCTCATCCTCTCCACCAAGACGCCGGAGAAGAAAAGAATTTTCGGGAAAGGAAACTTTCAGATGCTTACAGAGAAGATTAGAGCTACTCCTGGGGTCACAGCTGTCTTTGTGAACGTGGAACGTCTTTCACCTTCATCAGAAAAAGACTTAGAGGAAGCCTGGGGAGTTAAGGTGCTTGACAGATACTCACTTGTCCTGCACATTTTCCGCTGTAACGCTAAAACAAAAGAAGCCAAACTGCAGATCTCTTTAGCAGAGATTCCCTTGTTCAGATCACGCCTGAGAAATGAGGTTGCAAATTTAGACCAGCAAGGTGGTGGCCCAAGGTACATTATGGGTTCTGGTGAAACCCTGTATGAAATGCAGCAGCGATTGTTAAAGGAGCGAGAGCTGAAGATCCGATCAGCCCTGGAGCGCCTGAGGAGGAAGAGGAATCTGCTGCGCTCGCAGCGCAAACACAAAGACTTTCCCATCATCTCTGTCATGGGCTACACCAACTGTGgtaaaaccACTTTGATTAAAGCTCTGACTGGAGATGATGGGCTTCAGCCTAAAGACCAGCTCTTTGCCACACTGGATGTTACAGTACATGCAGGACAGCTGCCGTGTCACATGACTGTACTGTATGTAGATACCATTGGCTTTTTGTCGCAGCTCCCTCATCAGCTGATAGACTCCTTCTCTGCCACGCTGGAGGATGTGATACATTCTGACCTCATAATTCACGTAAGAGACATCAGTCATCCAGAAACTGTCAGCCAAAAGGTCAATGTACTGAATGTGCTGAACAATCTTCAGATCCCAGAAAGACTCCTGACCTCTATAATAGAGGTGCACAATAAGATTGACCTCATTGAGGGATATGAGTCCAGTGATCCTGAGGTTATCCCTATATCAGCTCTTAAACAATGTGGTCTGGAGGCATTAAAAGAAAAGATTGAGGAAGCTGTGCTTAAGTGTACTGGAAAACAAATGATGACCCTCAAGGTGCAGCTCAACACCTCTCAATTATCTTGGCTGTATAAGGAGGCGACGGTTCAAGCGGTAGATAACGTAGGAGACGACTGCACCGCCAATGTCAAGGTCATCATCAGCCAGGCTGCATATGGCCGCTACAGGAAGCTCTTTCAGGGCACAGCTTGGAGCGAAAAATGTTCTTCAGTGCATAGATGAATCCTTCGTGCAGTTCGTCACTCATCCCTTCAAAATTTCTGCAAGCCAGGATGATGATTTCTTTGGGATGAGATTCAAGCCATAAATTAACAGTCTCTAGAGTTTCCTAAAAAAGAAAGCATGTTTGGAAGGTAGAAAATGCACActgcaaataaatattaaagttaCAGACGTAAACAGATAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0043022 ribosome binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-62 Predicted to enable ribosome binding activity. Predicted to be active in cytoplasm. Orthologous to human GTPBP6 (GTP binding protein 6 (putative)).

Ensembl:

ensembl_id ENSDART00000157317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064903 lncRNA upstream 125880 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 135018 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064899 lncRNA upstream 191425 37184335 ~ 37250364 (+) False XLOC_032172
TCONS_00064904 lncRNA downstream 15206 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA downstream 20067 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00062878 lncRNA downstream 270399 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064905 lncRNA downstream 903771 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 1063309 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062865 mRNA upstream 130740 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062863 mRNA upstream 134302 37301341 ~ 37307487 (+) False XLOC_032173
TCONS_00062860 mRNA upstream 277372 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062859 mRNA upstream 540659 36878815 ~ 36901130 (+) True XLOC_032169
TCONS_00062858 mRNA upstream 544796 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062870 mRNA downstream 74473 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062869 mRNA downstream 74473 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062871 mRNA downstream 74489 37529399 ~ 37530820 (+) True XLOC_032179
TCONS_00062872 mRNA downstream 168783 37623693 ~ 37651943 (+) False XLOC_032180
TCONS_00062873 mRNA downstream 168794 37623704 ~ 37651938 (+) False XLOC_032180
TCONS_00062866 other upstream 106826 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 225601 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 451105 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 899687 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 929859 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062877 other downstream 260362 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 632585 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 922181 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1318508 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 1390766 38845676 ~ 38858302 (+) False XLOC_032191

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08024828_08028479.mRNA True 1590 mRNA 0.44 9 CI01000340 8024828 ~ 8028608 (+)