RNA id: TCONS_00062870


Basic Information

Item Value
RNA id TCONS_00062870
length 4108
RNA type mRNA
GC content 0.46
exon number 17
gene id XLOC_032179
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37529383 ~ 37600648 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCCATTATTGCCTGTGACTGTACCTGACGCAGCTGAAGCAGTGAGTGAGGAAACCCGCCGCCAGCATCCTGCACCATGGAGGCGGCCAAAGCACCAAAGCCATGGACGTTATATTTACCGAATCCCAGCTCGCTGTTTCCTCTCTTCGTGTTCATTTTAAGCCAATGTTATCGGATAAGCGCAGACGACGGCGGCATAGAAGAACTTGCAACGGAGAAAGAAGCAGAGGAAAGTCACAGGCAGGACAGCGTGAATTTACTCACATTCATTTTGCTTTTGACACTCACTATACTCACAATATGGCTCTTCAAACACAGAAGAGTGCGCTTCCTGCACGAAACCGGACTGGCAATGATATACGGTCTGTTGGTGGGTGTTATTTTGAGGTATGGCATTCCCTCCACCAGCTACCATAATAAAACTCCTCCGAGCTGCATGCTGAAGGAGGGTCCTGTCAGCACTGTGCTTCTCAATGTTAGCGGGAAGTTCTTTGAATACACGCTCAAAGGGGAGATCAACCTTCGAGAAATCCACAGTGTGGAGCAGAATGACATGTTGCGCAAGCTGACCTTTGACCCAGAGGTTTTCTTCAATATTCTGCTACCTCCCATCATTTTCCATGCCGGATACAGCCTCAAGAAGaGACACTTCTTCAGGAACCTGGGATCCATCATAACGTATGCCTTCCTGGGCACTGCAATTTCCTGTTTTGTCATCGGAAACCTCATGTATGGCGTGGTAAAACTGATGCAGGTTTTGGGTCAACTCACAGACAAGTTTTACTACACGGACTGTCTGTTTTTTGGTGCCATCATATCTGCCACAGACCCAGTCACCGTGCTTGCGATCTTTAATGAGCTCCATGCTGATGGGGATCTCTACGCTCTGCTGTTTGGAGAGAGTGTCATGAACGATGCGGTCTCCATAGTGCTTTCATCGTCGATTGTGGCATATCAGCCTTCAggagccaacacacacacattcgatGCCTCTGCCTTCTTCAAATCGGTGGGCGTCTTCATAGGCATCTTCAGCGGCTCTTTTGCTATGGGTGCAGTCACTGGTGTGGTCACCGCGCTTGTGACAAAATTCACCAAGCTGCACTGTTTTCCTCTACTGGAGACGGCTTTGTTCTTCCTCATGTCCTGGAGTACTTTTCTACTGGCTGAAGCATGTGGCTTCACAGGTGTTGTCGCTGTGCTGTTTTGTGGAATCACACAAGCTCACTATACCTACAACAATCTCTCAGAGGAGTCGACCAAACGCACTAAACAGTTGTTTGAGGTGTTGCACTTCCTGGCTGAGAACTTCATCTTCTCCTACATGGGCCTAGCACTCTTCACTTTCCAGAATCACGTCTTCAGCCCTATTTTCATAGTTGGAGCCTTTCTAGCCATCTTCATCGGCCGGGCCTTGAACATCTACCCCTTATCTTTTCTGATTAACCTGGGCCGAAGACACAAAATCCGAGGAAACTTTCAGCACATGATGATGTTCGCAGGGCTGCGAGGGGCTATGGCGTTCGCTCTGGCCATTCGTGACACTGCCACATACGCGCGGCAGATGATGTTCACTACGACCCTGCTCATTGTGTTCTTCACAGTGTGGGTGTTCGGAGGAGGCACCACGCCAATGCTATCCTGGCTGCACATCAGGGTTGGAGAGTCTTCTGATGCTGAGAAGGAGAGGATGCGTAGACTGTGGAATTACGACAGCAGAGTTGGAGTGGACCCCGATCAGGATCTTCAGCCATGCGGGGACAGCTTCCAGGTCCTTCAGGGAGATGGGAGCCAGTCAGAAGGGCAGAGCAAGACCAAGCAGGAGAGCGCCTGGCTTTTCAGACTTTGGTATACTTTTGACCACAATTACCTGAAGCCTATCCTGACCCATAGCGGACCCCCTCTGACCTCCACCCTGCCCGCCTGCTGCGGCCCATTGGCTCGATGTCTGACCAGCCCTCAAGCATATGAGACCCATGAGCCGCTGCGGGACAATGACTCAGACCTCATCTTGAACGAAGGAGACCTGACGCTGACCTACGGCGACACCGCCATCACAGCCAACGGAGCCTCATCCTCCTCTGGTCCCGAAGGGTCGGCTGGGATCTGGGGCCTGAATGGCAAACGCAGCGACAGCACGTCAGAAGACGCTCTGGAGAGAGAACTGGACACGCGTGAACATGAGCTGTTGAGCCGCGGCACACGTCTGGTTTTCCCCATCGAGGACCACGCTTGAACTCACCACCCATTCCTCAAACACCCCGCACTCCATACCTCCTCTCATATTGCACACCGCTCCATCCGACCATCCACAAACATCTCAAGACGGGGGGCTGAAATTTCAAGGAAACGGATGGGTTTGTGCTCTAGATGAGTTTGTTTACCAGAATGGAGGTGTCGAAGCTGTGGTAGGTTGAGTTTCTCCTCATGGAAATGTGGAGGAAAAGGAAAGCTTTGGAATAAGCTTTCGTTTATGATCATTAAATGACACTGACACATTCAGACATTCACACACGCAGCATTTATCATACATTACGCCATTATTACTTTGTTTAGCATTGCTGCTACAAACCGGAAATATGACTGAGCCAGTTTTTCTCTTGAAAAATTCAGGTTTTTTATGTATGAGCAGTCAGTATTAttaatcatttgcatttaaatgctCCTCTTCGCCGTCAGGCAAATGAGCAAGCAGCTCATCATATCTGTAAATACGCCAGACTGTACGTGGTGGTGGTGTTCGGTAAAATCCCTCGAACACAATGGGATCATTGTTTGATATGCGTGCATGTTCATCTCATGACTGCATACAGGATCCTTGTAATACTCAGCTCCAAGTGAGTTGTGGTTTACATTTCCTCTTGATATCTTGGTTGTCAACACCAACTTGATGTAAATATGAATGTTGATCTGCACAGTTGTGGgatttctttcctttttattcGATAAAACAGCTGGATGCAACCGGAGTGTATAAACCATGCACTTTAGCTGCAGTTGAGCTGCAGTCCTTGCATGTTTTGCTTTATTATATTGGATTATTAACCACTTGCACAGTCTGAAATTGTGACGTGAGATGATCGAAGAAGGTTTttagtgaatgcgtgtgtgtgtgtggcttgtCTTTTGAGCCTCTTCACATGCAGATCTTGTAGGAGTTGCTGCTATATGGCAACTTAACGATTCCGAAATCTGAAACATTTGGCATGACGTTGACCCGGCTGTTGAGTCTTTTCATAGAGTAAACAGATTCCATCAACCGCCAATGCAGATTCTTTCTATCCTCTGAGTCTAGAATTGAATTATGCTTGCTGTTAATGAATGCAAGTTTAAAGTCCGAACATTTGGTTAATAACTAACTCAGATGTTTGAAATAAGACTTCATTCCACTTGATGAACTAACCTTGGACTCCTTCGATTTAATAGCCTTTTACGACTGTCTCAATAGTCCGTGCCTGTCTGTCGTTTGCTTTTTAAGCTGTGAAAAGATGCCTCACCTTCAATGTCATCCACAGTATCTAGTTCAAAACCTAAATGTGAATTGAGATTTGCACTAATGAATGGAGATTTGGCTAGATAATGAGCGTTATGGGCTTTGTGGCAATTGAACAACCTTAAACTGGCTGTAGCAAAAGACTAAGTCACTCTCATGAATGGCTCCTCCGACGTGTCTGAAATGGGTTTTTTCTTGAACATTCTATGGTGGACTTGTGTGTACCTTCAGGATATGTAACTCTTTCCTGTAGCATTCATCTTTTACTTGCTGTTCTGCATGTACGTATCTGccatataaacaacaacaaagcatAATCAAGCTGCCATTTTTTAATGTCTATGATGCTAATTCCCCTCCTCACGCGAATccctattatttataataatatgattaatattataCATAAAGATGCATTCTTCTTGTCAAATAAAGTGACAACTGTGGTATGCATTGTAGCTTAACCAATTGTACATTCATGAAAATAGCCAATGTATCAAAGCGGGCTTCAGTAGCAATGCCTAAATAAGGTATTTGGTTTCTTTTCTATGTCATTcgaaaatactactactaataataataataaaacaagaaactaGTGTTTACTACAAAA

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0098719 sodium ion import across plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0055037 recycling endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-8 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Is expressed in female organism; gill; and testis. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 108. Orthologous to human SLC9A7 (solute carrier family 9 member A7).

Ensembl:

ensembl_id ENSDART00000136585

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064904 lncRNA upstream 53282 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 53282 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 213474 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 222612 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064902 lncRNA upstream 281733 37193900 ~ 37247650 (+) False XLOC_032172
TCONS_00062878 lncRNA downstream 124661 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064905 lncRNA downstream 758033 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 917571 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 1279794 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 1352833 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062867 mRNA upstream 74473 37441789 ~ 37454910 (+) True XLOC_032177
TCONS_00062865 mRNA upstream 218334 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062863 mRNA upstream 221896 37301341 ~ 37307487 (+) False XLOC_032173
TCONS_00062860 mRNA upstream 364966 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062859 mRNA upstream 628253 36878815 ~ 36901130 (+) True XLOC_032169
TCONS_00062872 mRNA downstream 23045 37623693 ~ 37651943 (+) False XLOC_032180
TCONS_00062873 mRNA downstream 23056 37623704 ~ 37651938 (+) False XLOC_032180
TCONS_00062874 mRNA downstream 25139 37625787 ~ 37652517 (+) True XLOC_032180
TCONS_00062875 mRNA downstream 54430 37655078 ~ 37692214 (+) False XLOC_032181
TCONS_00062876 mRNA downstream 54430 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062866 other upstream 194420 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 313195 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 538699 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 987281 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062877 other downstream 114624 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 486847 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 776443 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1172770 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 1245028 38845676 ~ 38858302 (+) False XLOC_032191

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08076352_08117930.mRNA True 3634 mRNA 0.47 17 CI01000340 8076352 ~ 8119164 (+)