RNA id: TCONS_00062886


Basic Information

Item Value
RNA id TCONS_00062886
length 812
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_032187
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38381957 ~ 38513578 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATTGTATTCCCCGAGCACCTAACCAAAAAACGCAGTCTCCGCAAGAGAGCGAAAACCCGGATCGCGGCGATTTGTTTACGCGTGCTTGACAGTAATTGGAGTTCTTTAGCAAAGACACACTGATGGAATAACGTAACCTGTTACCTAAGCAAGAAAACCTTACAACGTCCGTTTTGTCGCTCAGTtccttgtctgaaagagtataaggAATGTTTGGAATACAGAAACGAAGGCTGTTTGGAGTTCTTTCATTACCGGTAATTGTGGCAGTGATGTGCTGTGCTCAAAGcgCCAATGAACCAGGAAACATGTCTTTTGTCAAAGAGACAGTAGACAAGCTTTTGAAAGGCTATGATATTCGTCTACGACCAGATTTTGGAGGTGCACCGGTTGCAGTTGGCATGAGTATTGATGTGGCGAGCATAGACATGGTGTCTGAGGTCAACATGGACTACACGTTGACCATGTATTTCCAACAGTACTGGAGGGACAAGCGGCTGGCATATACTGGGATTCCTCTTAATCTCACTTTAGATAACAGAGTAGCTGACCAGCTCTGGGTTCCTGACACATATTTCCTAAATGACAAAAAGTCTTTTGTACACGGCGTCACAGTGAAGAACCGCATGATCCGCCTGCATCCAGATGGGACAGTTCTTTATGGATTAAGAATCACTACGACTGCTGCTTGCATGATGGATCTGAGAAGGTATCCATTAGATGAGCAGAATTGCACTCTGGAGATTGAGAGTTATGGATACACAACAGATGACATCGAGTTTTACTGGAAGGGAGGAGAAACCGCAGT

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101102-2 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye and telencephalon. Human ortholog(s) of this gene implicated in childhood absence epilepsy and developmental and epileptic encephalopathy 43. Orthologous to human GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3).

Ensembl:

ensembl_id ENSDART00000148678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064905 lncRNA upstream 66914 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 701432 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 951256 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 951256 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 1111448 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062888 lncRNA downstream 41258 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 403481 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 476520 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 893374 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 1055517 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062881 mRNA upstream 372506 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062882 mRNA upstream 372506 37894914 ~ 38054851 (+) True XLOC_032183
TCONS_00062880 mRNA upstream 579482 37754763 ~ 37847875 (+) True XLOC_032182
TCONS_00062879 mRNA upstream 645389 37752781 ~ 37781968 (+) False XLOC_032182
TCONS_00062876 mRNA upstream 696450 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062889 mRNA downstream 149723 38626684 ~ 38726402 (+) False XLOC_032189
TCONS_00062890 mRNA downstream 149965 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062891 mRNA downstream 296415 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA downstream 296456 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062895 mRNA downstream 368736 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062884 other upstream 50146 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 339746 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 710247 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 1092394 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 1211169 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062893 other downstream 296457 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 368715 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 893659 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1566654 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 2068904 40545865 ~ 40546975 (+) False XLOC_032225

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08531898_08544235.mRNA True 2584 mRNA 0.43 6 CI01000340 8531161 ~ 8545545 (+)