RNA id: TCONS_00062889


Basic Information

Item Value
RNA id TCONS_00062889
length 5598
RNA type mRNA
GC content 0.48
exon number 21
gene id XLOC_032189
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38626684 ~ 38730530 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTTGCACATGCCCTGCCTTAACGCATCTTCATCAAACTTACTAAGAGGAAAAAAGATGCCGCTGTAAAACTTTTCAGTGCTAACGAGAGACAGGGAGAGGATTGACGCGATGGGTGAGGACGATAAACCAGAGTGAGGAACTTTCCATACGGCCTTACATCGTCAAGGAGGATCAGCATGATTACATAGAGACCATCTTTTATTTGTTCAAGGAAAAGAGACAAAAGTTTGGGGCGAAGTATGGCGCGAGAGACTGGAGAGTCTGGAGAAACGAAAAGTGGGAAAGTGAAAAAGCACAAAAGAAGGAAAAGTAAAAAGGAGAGCAAAACAAGGACTGTACACGCCAACATTTTGTATGACCATACCAAAGGAGGGGATAACCCTAACAGACACTATGCAAACAATAAGATCAAAACCACAAAATACACTCTGCTTTCCTTCCTACCGAAGAACCTCTTCGAGCAATTCCACCGGTTTGCCAACGTGTATTTTGTTTTCATAGCCTTGCTGAATTTCGTGCCCGTGGTCAACGCTTTTCAACCGGAGCTTGCTCTTGCCccagtggtttttatattgtCCGTTACCGCTATCAAGGATTTATGGGAGGATTACAGGCGACACCGCTCGGATAAAGAAATAAATCATATGGACTGTCTCGTTTACTGCAGGAGTGAAAAACGGTATGTGGAGAAATACTGGAAGGAGCTGCGGGTCGGAGACTTTATTCGGCTACGGTGCAATGAGATTCTGCCGGCGGACGTTCTTCTGCTCAGTACCAGTGACCCTGACCGTCTATGTCACATTGAGACAGCCACACTGGACGGAGAAACCAACCTCAAGCAGAGGCAGGTGGTGCGCAGCTTCATCGACCTGgACTGTGAGTTTGACCCATTAAAATACAACAGCGTTATTGAATGTGAGAAGCCCAACAATGACCTCAACAGATTCCGAGGATACATAATTCATCGCAGTGGGAGGAGAGACGGCCTGTACAAAGACAATTTGCTGCTCAGGGGCTGCACCATTCGCAACACAGAGGAGGCTGTAGGAATCGTCATCTATGCAGGTCATGAGACAAAAGCAATGCTGAACAACAACGGCCCTCGTTATAAACGCAGCAAACTGGAGCGGCAGATGAACGTAGACGTGTTCTGGTGTGTCATCATCCTTTTGGTCATGTGCCTCTTTTCTGCCATTGGACATGGCCTGTGGATGTTTCAGTATGGAGATAAGAGGCCTGTCTTTGACGTCCTGGGCCCAGAAGGAACAGAATTATCTCCAGTGGTTTCAGCCATTTATCTCTTCCTCACCATGATTATAGTATTCCAGGTGTTGATCCCAATCTCGCTGTTTGTTTCCATTGAAATAGTGAAGATATGCCAGGTGTACTTCATCCATCAGGACTTGGAGCTTTACGATGAGGAAACAGACTCTCACCTGCAGTGCAGGGCTCTAAATATCACAGAAGACCTGGGCCAGATGCAGTACATTTTCTCTGATAAGACCGGAACGCTCACAGAAAACAAGATGGTGTTTCGCCGCTGTACTGTGGCAGGAGTTGAGTACTCGCATGATGCCAATGCAAGAAGAATTGCTATGTACCAGGAGGTGGAGTCAGAGGAGGAGGACTGCACATCTCATGGTGGGACTCTTCCACGGCGGGACAGCGTTGCCAGCCACCAGAGCGGAAAAGTGGTGTTGCGATCACAAAGCACCAAATCTCACCGCCGCACCGGGAGCAGAGCTGAAGCCAAACGGGCCAGCATTCTATCCAAACACACTGCCTTCAGCAGCCCCATGGAGAAGGACATTACTCCGGATCCCCAGCTGATGGATAAGGTGAATGAGTGTAGCAGTCAGATGGAGTTCATGCGTTTTCACAGTCAGTCCTTGAATCAGATCCCGCCTGACCTGTGTGACGTCTTCGACTTCTTCATCGCTCTCACTATCTGCAACACTGTGGTTGTTTCTTCACCAAATCAACCCCGGCAGAAGGTGCGTCGCTTCGAGCTGAAGTCTCCAGTGAAGACGATCGAGGACTTCATCAAGCGCTTCACTCCGAGCCGCTTGACCTCCGGCTCCAACAGCAGCAGCTCCTCCAGTCTGGCCACCAACCGCTCGTCCTCACATAAACTGGGTTGCAGCATGCTGTCCTCCCCGTCAGCTGAAAACACGCTCACCAAACTAAACGAGGAGAAGCGGCAGGAACATGACCTACAGCATGCTTTCAGCCCCGTCCCGCCAAACTTCGATAAATCTAAAGCTTTGGCTCAGGATGAATGTGAACTCAGGTTTGAAGCTGAGTCTCCGGACGAAGCCGCTCTGGTTTATGCAGCTCGGGCTTATAAATGCGCTCTCGTTGGTCGTTTGCCTGATCAGGTGACGGTTGAACTTCCACATTTGGGAAAGTTGAGCTTCGAGCTTCTGCACACCTTGGGGTTTGACTCTACAAGAAAGAGGATGTCGGTGGTGGTTAAGCATCCGCTGACTGAACAGATCACAGTCTACACTAAGGGTGCCGATTCGGTTATCATGGATTTGATCAGGCCAGCTACAGATGATTGCAAAGGAAAGCGGCAAAGGAAAATCTTGTATAAAACCCAAAACTACTTAAATTTgtatgctgcagatggtctgagGACACTCTGTATCGCTAAAAAGgtgctcagtaAGGAGGAGTATGCTAGTTGGTTACAGCGCCACCTGGAGGCAGAAACAGCCATACAGAGGAGAGAGGAGCTGCTATTTGAGTCTGCGTTACGACTTGAAACCAACCTCCAACTTTTGGGAGCAACTGGTATTGAGGACAGACTTCAAGATGGGGTCCCCGAGACCATCGCCTCTCTGAGGAAAGCCGGTCTTCAGATCTGGGTGCTAACAGGAGATAAACAAGAGACTGCCATCAACATTGCCTACGCTTGCAAACTGCTGGACCCAGAGGAGGAGATCATCACTCTTAATGCTGACTCGCAGGAGGCCTGTGCTAGGTTGCTGGAGAACAGTCTGCACTATATCCAGGCAAAGTTTCTCTGCGACCCTCGAGCAGGTCCTCAAGCAGCAGGAGACTACGCTGGCATCCATTTCTCTTCTCCTGTGTGTTCTCCGACCTCCTCCGGCCACTCCGGCCCCTTCCTGGTGCACCGGCTCGGCCTTGTGATCGATGGTCGCACCTTGGCCTATGCACTGGACAAGAGTTTGGAGGATAAGTTTCTGGCTGTGGCCCGGAGCTGCAGGTCTGTCCTGTGCTGCCGCTCGACGCCCTTGCAGAAGAGCATGGTGGTCAAGCTAGTGCGCAACAAGCTCAAGGTCATGACGCTGGCAATAGGTGACGGAGCCAATGACGTTAGCATGATCCAAGTGGCTGATGTGGGAGTGGGGATCTCTGGACAGGAGGGCATGCAGGCAGTAATGGCCAGTGACTTCGCCCTGCCACGGTTTCGATATCTGCAGAAGCTGCTCTTGGTTCATGGCCATTGGTGTTACTCTCGTCTTGCTAACATGATCCTTTACTTCTTCTACAAAAATGCTATGTTTGTTGCCCTGATCTTCTGGTATCAGTTCTACTGTGGGTTCTCCGGGTCAGCCATGGTGGACCAGTGGTACCTGATCTTCTTCAATCTGATGTTCTCCGCGTTCCCTCAGCTCATCACCGGCACACTGGACAAAGACGTGTCAGCAGAAACGCTTCAGGAGCTGCCGCAGCTCTACATGAATGGACAAAACTCAGAGGAATATAAACCCTACATGTTTTGGATGAACATGATTGATGCCTTCTACCAAAGCCTCATCTGTTTTTTTATCCCCTACTTTGCTTATATTGACTCTGATGTGGACTTGTTTACGTGGGGTACTCCCATCACTACCTTGGCACTCTTCACTATTTTGCTGCACTTGGGCATCGAAACCAAAACCTGGACGTGGATGAACTGGGTGTCGATTGGCTTCAGTATGGCCCTCTTCTTTACTGTGGCGCTGTGCTATAACGCCTCCTGCCCGACCTGTTTCTCTCCCTCCAACACCTACTGGACCATGCAGAGGCTGCTGGGAGATCCGCTCTTCTACCTACTGTGTGTCGTCACACCTGTCGCCGCTCTTCTGCCCAGATACTGTTATAGAGCCTGTCAGGGAACTCTATTCCCAAATCCTGTCCACATGGGAAGACAACTGGACAAACTGCCAGTGGAGATGCGCAGACTGGTCCTGAGTCAGAGCCAGATGAAGCTGGGCTCCCTTGGGTCGCTCTTCGCCCCTCGCGCCCCATTTTTCCCCCTTTGTAGGCCCTTCCAGAAAGACTACCGGCCTAAAGCAAAGCAAAGCCACGTGAGCAGCACCAAACCAAAGGAAAAAGCTCTCGCCAGCCCCATCTCGTCAAAGAGCGTGGAGATGCGGGACACCCCGGTAAGCTCAAAGAACTCAGACAACCATATCAAACTCAACTTCAGAAAGCAGGACAAAGCTCAGTCCTGCCGACAGGCCTCAGACGGGCCAGTCCCAGAGAACTTATGCTATGTGAAGGAACCATCGAGTCCCATTACAGGCACTCTGCCATACACCAAAGACACTCCTGCATCCAGGACACTTTTAGAAAGCACAGGACTGGAGGTCCCGCTGAGCCCAACAGGCCTGCTACTCTCCTCCACTCCTCTGCTTTCACAAACTGAGACTATGCAGCTCACCTCGCCACCCGCTAGCTGCTTTTTGGGACAAAAGCTAAACGACGAGGAGCTTTCAAACCAAAAATCCCTACTAAAACAGTCCCAGGACAGGGATCACAGCTGCCTACCAGAACATTCACTCAAAACTACATTTCTATGATGCTTTCTACCTGTTATGCTGAATCCAATTTGCACGATAGCTTTAAGAAATGTTATTATATATTCATGATTATTTTATGAAGATATAGGTTTGGTACtacatatatatagatatatattttagATGTATAAAGTTTAGATTAAAGGTTGTTCTGTTTTTTGAGAgcttgagtgagtgagtgtggcCAGCATATGCAAACTGGATggtcttttattttactttactatgactgattttttttttctttccttttttttttcttgtttggaAACCATCTCAAAAGTGGAGGAGGTTTGTTTCTCCAAGCAGAAGCAGTCCAGATACATTCCTTTATCTGTTTATTTGGACCTGGATGTTCTGGCGCACTTTATAGAGCCTTCCTCTCCTAccgttagacactgctgatagcACTACACTCGTACTTCCCATTCCcagaaccaaaaacaaaacaaaaataacggTACCCTTCGCAGTCAGTAGCTAAACAAATTCCAGAGATCCAGAGACAAAAAGTGTACTTGAGGAGTCCTGAACTAATATTTGCTTTTAAATTAAAGTTTCAAACCGATCAAGAACTAATCTGCTTGAAAGTTCActcaaatataaaaatgtctttatttgcattcattacatttgttttcatTACATTTGTGAATTTGCAGCCAttaacttctatagtatttttagtTCCTACTAAGGTTGTCAATGGCAGCTGCCATTTttctgaatttctttcttctgttgaacacaaaaccagGTATTGAGAAAAATTGCAGCAGCC

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101102-1 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ATP10A (ATPase phospholipid transporting 10A (putative)).

Ensembl:

ensembl_id ENSDART00000086533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062888 lncRNA upstream 36512 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 266241 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 900759 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 1150583 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 1150583 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00062900 lncRNA downstream 154040 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 227079 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 643933 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 806076 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 806076 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062887 mRNA upstream 113106 38427570 ~ 38513578 (+) True XLOC_032187
TCONS_00062885 mRNA upstream 113159 38381957 ~ 38513525 (+) False XLOC_032187
TCONS_00062886 mRNA upstream 149723 38427357 ~ 38476961 (+) False XLOC_032187
TCONS_00062881 mRNA upstream 571833 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062882 mRNA upstream 571833 37894914 ~ 38054851 (+) True XLOC_032183
TCONS_00062891 mRNA downstream 46974 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA downstream 47015 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062895 mRNA downstream 119295 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062896 mRNA downstream 119446 38845848 ~ 38850457 (+) True XLOC_032191
TCONS_00062897 mRNA downstream 153559 38879961 ~ 38894366 (+) False XLOC_032192
TCONS_00062884 other upstream 249473 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 539073 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 909574 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 1291721 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 1410496 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062893 other downstream 47016 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 119274 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 644218 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1317213 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1819463 40545865 ~ 40546975 (+) False XLOC_032225

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08632493_08682360.mRNA True 4926 mRNA 0.49 22 CI01000340 8632373 ~ 8682405 (+)