RNA id: TCONS_00062916


Basic Information

Item Value
RNA id TCONS_00062916
length 1302
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_032203
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39360377 ~ 39365467 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACACTCATCTTCTACTGCAGCCAGAGCTTCATTCCTCCAAAACCATGAGCTTCTACGCACCCCAGGCCTCTCACATCTCCTTCACCCGCTCTGCGCCCGCTTACCGGGCTGCCAGTACGTATGGTGGGGCAGGTGGGCAAGGCACCAGAATCTCATCCGCTTCTGCGATGTCTTATCGTTCAGCCCCTAGAAGTGGGGGAATTTCCTCTTCCACAGCCTTCAAGGTGAGCTCAGCCGGCATGGGCTCTGGCGCAGGGGGTTCCTTCTTGGCGAGCTCTGGGTCCTCAGGTGGCATGCTGGGCAATGAGAAAGGCCAGATGCAGAATTTAAACGACCGTCTGGCTGCTTACCTGGACACAGTGCGCAGGTTGGAGCAGGAGAACGGCAAACTGGAACAGCAGATTCGAGAGGCTCTGGAGAAAGGTGGACCAGAAACACGCGACTACAGCAAGTACAACGCCATCCTGGATGACCTGAGGAGGAAGGTGTTTGATGCCACTGTGGACAATGCTCGTCTTGTTCTGCAGATTGACAACGCTCGTCTGGCTGTGGATGACTTCAGAGTCAAGTTTGAGAATGAGATGGCAATCAGGCAGTCTGTGGAAGGAGACATCGCAGGTCTAAAGAAAGTTATAGATGAAACCAATATTGGTCGCCTGAATGTGGAGGGAGAAATCGAGTCCTTGAAAGAAGAGCTTGTCTTCCTCAAGAAAAACCATGAAAATGAAGTTGATGAGCTACGGAGCCAGATCTCTCAGTCAGGCGTTCAGGTGGATGTTGATGCACCCAAGGGCCAGGATATGTCTCAAGTGATGGAAGACATGAGAGCTAACTATGAGAAACAGGCTCTCAAAAATGCAGAGGAACTCAAAATGTGGCATGAAACCCAGATAGCAGATGTTCAGGTGCAGGTGGCTCAGAACACAGAGGCATTACAAGGTGCTCAGATGGAGTGTAATGACCTACGCCGACAGATTCAAACACTAGAAATAGAGCTTGCATCACAACAAAACCTGaaAGCGTCACTTGAAGATACTCTACGAAACACTGAGATACGTTCAAATGGAGAGATGGAGAAGTTAAATAACATCATAATTCAACTTGAAGCTGAGCTGGCACAGCTGAGGGCAAATATCACAGAACAGGGACAGGAATATGAAGCACTCCTTAATATGAAGATGAAACTGGAAGCGGAAATTAACACCTACAAGAAACTTCTAGATGGGGAAGATTTCAAGTAAAGAGGAAAAGTTTAATTCTTGTATTTCATAGGGCATTAAATACAGTCACTGATTCTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1508 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including floor plate; sensory system; vein; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

Ensembl:

ensembl_id ENSDART00000151322

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064906 lncRNA upstream 405343 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062900 lncRNA upstream 474931 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00062888 lncRNA upstream 770297 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 1000026 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1634544 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00062917 lncRNA downstream 5378 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 167521 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 167521 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064907 lncRNA downstream 167521 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064910 lncRNA downstream 168537 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00062914 mRNA upstream 53748 39290777 ~ 39306721 (+) True XLOC_032202
TCONS_00062912 mRNA upstream 74440 39279104 ~ 39286029 (+) False XLOC_032201
TCONS_00062913 mRNA upstream 75528 39279831 ~ 39284941 (+) True XLOC_032201
TCONS_00062910 mRNA upstream 107618 39222598 ~ 39252851 (+) False XLOC_032200
TCONS_00062918 mRNA downstream 5658 39370615 ~ 39375522 (+) False XLOC_032204
TCONS_00062920 mRNA downstream 128907 39493864 ~ 39497974 (+) True XLOC_032205
TCONS_00062921 mRNA downstream 134666 39499623 ~ 39503381 (+) True XLOC_032206
TCONS_00062922 mRNA downstream 141086 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062923 mRNA downstream 171639 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062894 other upstream 502167 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 578311 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 983258 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1272858 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1643359 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062919 other downstream 5663 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 678658 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1180908 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1829730 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 2089834 41454791 ~ 41454873 (+) True XLOC_032256

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_09053887_09057663.mRNA True 1194 mRNA 0.51 6 CI01000340 9053887 ~ 9057663 (+)