RNA id: TCONS_00062919


Basic Information

Item Value
RNA id TCONS_00062919
length 500
RNA type processed_transcript
GC content 0.38
exon number 3
gene id XLOC_032204
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39370335 ~ 39378734 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaaaaaaagaagaggcaagaaacaaaaaaaaagagtgtgAAGGCATGGCAGCGTAAAGCCTGGAATTTACTTACAACTGCTACATTGCAATGGAGATGCACAAAGCACTGGTTTCTGTGTTTATGAACAATGGTGGGAAGACTTTTGCACATCATTAGCTTTTACAATCAACTCACAAAAATAAGCTGATACAGAATTCTGGTTAAAACAGCATGagGATGTGCTTTGTAAATAGATCCCAGGCTGAATTCTTAGCATTCCGTGTGCAGCCGTATTTATGGATGGGATCCTGTCTCTTCAGTGGAAAGTGTGTGAAATGGAGGGAAGCAGCAAAAGATATAAAGATAACACAGAAACAGCCATAGGCATTAACTATTCGGAATGAACAAGAGCATTTATGCGTAGCAAGGATTTGTTGGATTAGCCAAAAATCTTGACTCCAGAACTGTGGTGAATATAGTAATGTTGatgtatatttgtttaaaatgctCTTAGTGTG

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0048731 system development biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0048732 gland development biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035270 endocrine system development biological_process
GO:0048513 animal organ development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-3092 No description available

Ensembl:

ensembl_id ENSDART00000156941

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064906 lncRNA upstream 415494 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062900 lncRNA upstream 485082 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00062888 lncRNA upstream 780448 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 1010177 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1644695 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064909 lncRNA downstream 160603 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 160603 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064907 lncRNA downstream 160603 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064910 lncRNA downstream 161619 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00064675 lncRNA downstream 161619 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00062915 mRNA upstream 5153 39360377 ~ 39365467 (+) False XLOC_032203
TCONS_00062916 mRNA upstream 5663 39360469 ~ 39364957 (+) True XLOC_032203
TCONS_00062914 mRNA upstream 63899 39290777 ~ 39306721 (+) True XLOC_032202
TCONS_00062912 mRNA upstream 84591 39279104 ~ 39286029 (+) False XLOC_032201
TCONS_00062913 mRNA upstream 85679 39279831 ~ 39284941 (+) True XLOC_032201
TCONS_00062920 mRNA downstream 121989 39493864 ~ 39497974 (+) True XLOC_032205
TCONS_00062921 mRNA downstream 127748 39499623 ~ 39503381 (+) True XLOC_032206
TCONS_00062922 mRNA downstream 134168 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062923 mRNA downstream 164721 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062926 mRNA downstream 440600 39812475 ~ 39831089 (+) True XLOC_032211
TCONS_00062894 other upstream 512318 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 588462 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 993409 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1283009 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1653510 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062936 other downstream 671740 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1173990 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1822812 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 2082916 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 2091910 41463785 ~ 41493470 (+) False XLOC_032257

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU157189 True 571 lncRNA 0.33 1 CI01000027 1237749 ~ 1238319 (+)
mexican tetra (Astyanax mexicanus) TU157189 True 2680 lncRNA 0.40 3 NC_035909.1 36823464 ~ 36831576 (+)