RNA id: TCONS_00062920


Basic Information

Item Value
RNA id TCONS_00062920
length 1838
RNA type mRNA
GC content 0.37
exon number 3
gene id XLOC_032205
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39493864 ~ 39497974 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCTCGTCTATCAAACATGATTCAGATTTGATAGTCATATAAAAATGTCGCTGTTTATGAACTTGTGCGCGTTTTTCTGCAAACTCGTCGTGCTCCCGATGTACATCGCGGAGCAGGCGGGACTCTTGTCTTTCTACAAACGCGTCTTTCCTATCATTGTCTATAAAATCTCCTTCTCGTACAATGACAAAATGAACGACAAGAAACGGGAACTATTCCGAAACCTGGACCGATTTTACCCCTCGAAAGGCTCTCTGCGCATTCTGGAAGTGGGCTGCGGATCTGGGGCGAACTTTGAGCACTACCCGACGGGCTCCAAGATCACCTGCACAGACCCCAACCCGCATTTCAAGAAATACCTGGAGAAAAGTATGGAGAAGAACGAGCACCTGGTGTACGACAGCTTTATAGTGGCGTCGGGGGAGAATCTGCAGGCGGTGGAGGACAGCTCGGTGGATGCTGTGGTTTGCACTCTGGTTCTGTGCTCGGTCAAAGACACCAACAAAGTTCTGCAGGAGGCAAAGAGGGTCCTGAGGCCTggaGGAGCGTTTTTCTTTCTTGAGCACGTGGTGTCAGACCCTTCAACCTGGGTTTACTTTTTTCAACATGTTCTTCAGCCATTCTGGTACTTTTTTGGCGATGGCTGTGAAACAACCCGTACTACTTGGAAGGACATTGACGCTGCAGGATTTTCAGATGTGAAGCTTCGCCACATTCAAGCTCCTCTGTTTTTCATGATCAAACCACACATCGTTGGCTATGCCGTCAAATAATCGATAGTAATATGAATTCTgccaaacatacaaaaaaaatcttaagtgtGTTTTCGTTTAGTGAGCCTGATTCATTTCACCAtgcacttttaaatgtttttctatgAGCAATGTTACATGCCATAGAATATAGTTTGTTTACCATGAATAGAGATTGcattgtatattttataaaactGTATCTTGCTGCATGAGTCTGCAAAACGCATGATAACTGAAGCCGACAAAAACACAAACGTGAACCAATGAAAGACATTCATCATAAAACAGGCATTGGGATAATATGGTTTAAAAAAGCAacactgccatctagtggtcagGGTGAATCACTaagaaaaataaacttaattttaaCTTCTTCTGTACTAGCTAAAATAGTTAAAAGCACCACAAGCATTGTCCACCTTTAacagtttgattgacattttGATTTCCTGGCCACTGAATTtccttattttatgtttgattttggttcaataatttatttttattcacataaaatttaagaaatgcaattaaaaagGCTCTATTTATGAAAAGTCATTTCTAGATGCTCCAACTGAATTTGACAAATGTATTTTTAGTACAAAATGCATTAATAGTTTTTTATATGCCTGGAAAAGAATATTTTATCATTACCGGATATTTTTATGCTGTTTGTGGCTGTGGGAACTCATTacaacatacagtgctcagcatatacgagtacacccctcacaaatcttatAAAGTcttataaattcatatttttagtaGGAAGCTACACAATATTAtacttgtgcatatacattagattagtcagtactgaagccaaatctggagcttatctaacaaaataacttttgatAATGCTCCAAAAACTAGAACACTCAAATTtatatgctatagaaaaatattaaatacgaatttaaaaaggaaaaatcaagagaagcaaaaaaaaaaagatattttttgttgaaatgttgtaggttgtaattttttgtatttaattgtattatctttgaatttctatatatatttggtgacggaaatattattttaataaatatatctgtttaatgaa

Function

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-239 Predicted to enable methyltransferase activity. Orthologous to human METTL7A (methyltransferase like 7A).

Ensembl:

ensembl_id ENSDART00000086263

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062917 lncRNA upstream 115130 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064906 lncRNA upstream 538738 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062900 lncRNA upstream 608326 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00062888 lncRNA upstream 903692 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 1133421 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00064909 lncRNA downstream 34504 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 34504 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064907 lncRNA downstream 34504 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064910 lncRNA downstream 35520 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00064675 lncRNA downstream 35520 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00062918 mRNA upstream 118342 39370615 ~ 39375522 (+) False XLOC_032204
TCONS_00062915 mRNA upstream 128397 39360377 ~ 39365467 (+) False XLOC_032203
TCONS_00062916 mRNA upstream 128907 39360469 ~ 39364957 (+) True XLOC_032203
TCONS_00062914 mRNA upstream 187143 39290777 ~ 39306721 (+) True XLOC_032202
TCONS_00062912 mRNA upstream 207835 39279104 ~ 39286029 (+) False XLOC_032201
TCONS_00062921 mRNA downstream 1649 39499623 ~ 39503381 (+) True XLOC_032206
TCONS_00062922 mRNA downstream 8069 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062923 mRNA downstream 38622 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062926 mRNA downstream 314501 39812475 ~ 39831089 (+) True XLOC_032211
TCONS_00062927 mRNA downstream 338500 39836474 ~ 39866670 (+) True XLOC_032212
TCONS_00062919 other upstream 121989 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 635562 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 711706 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 1116653 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1406253 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062936 other downstream 545641 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1047891 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1696713 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1956817 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1965811 41463785 ~ 41493470 (+) False XLOC_032257

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_09133213_09134688.mRNA True 1439 mRNA 0.41 3 CI01000340 9132482 ~ 9134688 (+)