RNA id: TCONS_00006280


Basic Information

Item Value
RNA id TCONS_00006280
length 1664
RNA type mRNA
GC content 0.54
exon number 9
gene id XLOC_003188
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6009984 ~ 6037759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATTTCTTTTTAAACTCACGTGGAGCGCTCGTTACTCCCAACGGCTTTATAATAAGCGTTTAACAATGATTTGTACAATAAACCTGTACATCATTCCATAGAGCCCATTACCATGCATTTTATAAGTTGTTGTTTGAGGAGAAGTACTGTCTCAATTGCTGTCTCAAGGTCTCTTTTAGTGAAAAGGCTGTTTTGTTCTGGCTGGCCTGGGGATGACACTATCTACTCCTTGTCGTCGGGTCAGGGCAAGTGTGGGGTGGCGGTGGTCCGGGTCAGCGGTCCGGCTTCAGCGCTCGCTGTTCGCCGTCTGACCCGAAGCCTCCCTGCGCCTCGAACTGCCAGCCTCCGCAGCATCAGCCACCCGCAGAGCAAAGAGCTGCTGGACCGCGGCCTGGTCCTATGGTTTCCAGGTCCCGCTAGTTTCACTGGAGAGGACAGTGCAGAATTCCACATTCACGGTGGTCCTGCTGTCATCAGCGGGGTCTTGCAGGCACTTGggagTTTGCCTGGCTTGCGGCCAGCAGAGGCAGGTGAGTTCACCCGACGGGCGTTTTACGCTGGAAAGTTGGATCTTACTGAAGTTGAAGGTCTTAGTGATCTGATCCATGCTGAGACAGAAGCACAGAGACGACAGGCGCTCCGGCAGATGGCAGGAGACCTGGGCCGCATCTACCAGGACTGGACAGATCAGCTTAAACGATGCTTGGCTCACGTGGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAGTCTTGAATGACGTGGACAGAGCCGTTCAGCAGCTGCAGACGGACATGGAAAACCACCTCTCGGATGAGCGCAGAGGAGAGCGTCTGCGCAGCGGGGTTCATGTGGTCATCGCTGGAAGCACCAACGCTGGCAAAAGCAGCCTACTCAACCTGCTCACCCAACGTCCTGCAGCCATAGTGTCTCCTACAGCCGGGACCACCAGAGATGTACTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGATACAGCAGGACTACGGGACACCAGTGACAGTGTGGAACAGGAGGGCGTCCGGCGCGCCCGGCAGCGGGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATTGAGGCTTTACAGCAGTATCATGAGTACAGGGATGTGGACCTGGCGCTGGCGGCTGAAGGCCTTCGTTTGGGGCTCTTGAGCCTGGGCAGGATCACTGGTAGAGTTAGTCCTGAGGAAATATTAGACGTCATTTTCAGAGACTTCTGTATTGGGAAGTAGAACAGTGTAAATGggtgtacattttttaaataaaaatcagacACAAA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0030488 tRNA methylation biological_process
GO:0048568 embryonic organ development biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-335 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial).

Ensembl:

ensembl_id ENSDART00000022526

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008522 lncRNA upstream 43788 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00006284 lncRNA downstream 32116 6069875 ~ 6074783 (+) False XLOC_003189
TCONS_00008528 lncRNA downstream 32124 6069883 ~ 6074783 (+) False XLOC_003189
TCONS_00006285 lncRNA downstream 32132 6069891 ~ 6072934 (+) False XLOC_003189
TCONS_00006286 lncRNA downstream 32401 6070160 ~ 6073081 (+) False XLOC_003189
TCONS_00008529 lncRNA downstream 32700 6070459 ~ 6074783 (+) False XLOC_003189
TCONS_00006277 mRNA upstream 78555 5926850 ~ 5931622 (+) True XLOC_003186
TCONS_00006275 mRNA upstream 84660 5880627 ~ 5925517 (+) False XLOC_003185
TCONS_00006272 mRNA upstream 87130 5880562 ~ 5923047 (+) False XLOC_003185
TCONS_00006274 mRNA upstream 87130 5880582 ~ 5923047 (+) False XLOC_003185
TCONS_00006270 mRNA upstream 157582 5842663 ~ 5852595 (+) False XLOC_003184
TCONS_00006287 mRNA downstream 38887 6076646 ~ 6098974 (+) False XLOC_003190
TCONS_00006288 mRNA downstream 38935 6076694 ~ 6079855 (+) False XLOC_003190
TCONS_00006290 mRNA downstream 42769 6080528 ~ 6101104 (+) False XLOC_003190
TCONS_00006291 mRNA downstream 45162 6082921 ~ 6101104 (+) True XLOC_003190
TCONS_00006292 mRNA downstream 77862 6115621 ~ 6124508 (+) False XLOC_003191
TCONS_00006273 other upstream 86436 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 478601 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 528293 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 2041868 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2496069 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006299 other downstream 98562 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 171411 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 172152 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 290219 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 824493 6862252 ~ 6862368 (+) True XLOC_003212

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_03943917_03961522.mRNA True 1462 mRNA 0.56 8 CI01000057 3943917 ~ 3961537 (+)