Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006282 |
| length | 1344 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 10 |
| gene id | XLOC_003188 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6009984 ~ 6037759 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006400 | tRNA modification | biological_process |
| GO:0030488 | tRNA methylation | biological_process |
| GO:0048568 | embryonic organ development | biological_process |
| GO:0002098 | tRNA wobble uridine modification | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-335 | Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial). |
| ensembl_id | ENSDART00000188999 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008522 | lncRNA | upstream | 43902 | 5955287 ~ 5966389 (+) | False | XLOC_003187 |
| TCONS_00006284 | lncRNA | downstream | 32386 | 6069875 ~ 6074783 (+) | False | XLOC_003189 |
| TCONS_00008528 | lncRNA | downstream | 32394 | 6069883 ~ 6074783 (+) | False | XLOC_003189 |
| TCONS_00006285 | lncRNA | downstream | 32402 | 6069891 ~ 6072934 (+) | False | XLOC_003189 |
| TCONS_00006286 | lncRNA | downstream | 32671 | 6070160 ~ 6073081 (+) | False | XLOC_003189 |
| TCONS_00008529 | lncRNA | downstream | 32970 | 6070459 ~ 6074783 (+) | False | XLOC_003189 |
| TCONS_00006277 | mRNA | upstream | 78669 | 5926850 ~ 5931622 (+) | True | XLOC_003186 |
| TCONS_00006275 | mRNA | upstream | 84774 | 5880627 ~ 5925517 (+) | False | XLOC_003185 |
| TCONS_00006272 | mRNA | upstream | 87244 | 5880562 ~ 5923047 (+) | False | XLOC_003185 |
| TCONS_00006274 | mRNA | upstream | 87244 | 5880582 ~ 5923047 (+) | False | XLOC_003185 |
| TCONS_00006270 | mRNA | upstream | 157696 | 5842663 ~ 5852595 (+) | False | XLOC_003184 |
| TCONS_00006287 | mRNA | downstream | 39157 | 6076646 ~ 6098974 (+) | False | XLOC_003190 |
| TCONS_00006288 | mRNA | downstream | 39205 | 6076694 ~ 6079855 (+) | False | XLOC_003190 |
| TCONS_00006290 | mRNA | downstream | 43039 | 6080528 ~ 6101104 (+) | False | XLOC_003190 |
| TCONS_00006291 | mRNA | downstream | 45432 | 6082921 ~ 6101104 (+) | True | XLOC_003190 |
| TCONS_00006292 | mRNA | downstream | 78132 | 6115621 ~ 6124508 (+) | False | XLOC_003191 |
| TCONS_00006273 | other | upstream | 86550 | 5880575 ~ 5923741 (+) | False | XLOC_003185 |
| TCONS_00006262 | other | upstream | 478715 | 5531443 ~ 5531576 (+) | True | XLOC_003178 |
| TCONS_00006260 | other | upstream | 528407 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
| TCONS_00006254 | other | upstream | 2041982 | 3965727 ~ 3968309 (+) | True | XLOC_003171 |
| TCONS_00006246 | other | upstream | 2496183 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006299 | other | downstream | 98832 | 6136321 ~ 6144643 (+) | True | XLOC_003192 |
| TCONS_00006305 | other | downstream | 171681 | 6209170 ~ 6223299 (+) | False | XLOC_003195 |
| TCONS_00006306 | other | downstream | 172422 | 6209911 ~ 6223299 (+) | False | XLOC_003195 |
| TCONS_00006310 | other | downstream | 290489 | 6327978 ~ 6328093 (+) | True | XLOC_003199 |
| TCONS_00006329 | other | downstream | 824763 | 6862252 ~ 6862368 (+) | True | XLOC_003212 |
