RNA id: TCONS_00006283


Basic Information

Item Value
RNA id TCONS_00006283
length 437
RNA type processed_transcript
GC content 0.53
exon number 3
gene id XLOC_003188
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6009984 ~ 6037759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGAGCAGGCGGATCTGTCTCTGGTGGTTGTGGACTTGACGCAGCTTCCTTCTGAGCGCCGGCATGTGCCCGTTTTCCTCAGAGGACACTTGAAGAATATCCTGGAGCGCTCctctcagcagcagcagcacatcCTGATCCTTAACAAAAGTGACCTGGTCTCTGCTGAACAGCAGCGCAGCATCCAGACGTCCCTTCAGGAGCTCTCTGATGCTCCTTCTGCATGCTTTCTGTCCTGCCACAGCAGAGATGGCCTGGAGGAGCTCCTGACTCTATTGCATAACACTCTGAAGACCCTgcaactgaatcggaagttcttaAATAATTGGAAAAACCAACACACTtctgcattgcagaataagGTGTGGTGACCCGCTGATAGGCAGCCCGACTCTGACTCAGACTCGACACCGGACTCACCTGCAGAAGAGCATT

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0030488 tRNA methylation biological_process
GO:0048568 embryonic organ development biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-335 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial).

Ensembl:

ensembl_id ENSDART00000166488

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008520 lncRNA upstream 67853 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA upstream 67853 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00008523 lncRNA upstream 67853 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00008522 lncRNA upstream 67853 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00008524 lncRNA upstream 67853 5955288 ~ 5966389 (+) False XLOC_003187
TCONS_00006284 lncRNA downstream 32322 6069875 ~ 6074783 (+) False XLOC_003189
TCONS_00008528 lncRNA downstream 32330 6069883 ~ 6074783 (+) False XLOC_003189
TCONS_00006285 lncRNA downstream 32338 6069891 ~ 6072934 (+) False XLOC_003189
TCONS_00006286 lncRNA downstream 32607 6070160 ~ 6073081 (+) False XLOC_003189
TCONS_00008529 lncRNA downstream 32906 6070459 ~ 6074783 (+) False XLOC_003189
TCONS_00006281 mRNA upstream 11645 6010191 ~ 6022597 (+) False XLOC_003188
TCONS_00006277 mRNA upstream 102620 5926850 ~ 5931622 (+) True XLOC_003186
TCONS_00006275 mRNA upstream 108725 5880627 ~ 5925517 (+) False XLOC_003185
TCONS_00006272 mRNA upstream 111195 5880562 ~ 5923047 (+) False XLOC_003185
TCONS_00006274 mRNA upstream 111195 5880582 ~ 5923047 (+) False XLOC_003185
TCONS_00006287 mRNA downstream 39093 6076646 ~ 6098974 (+) False XLOC_003190
TCONS_00006288 mRNA downstream 39141 6076694 ~ 6079855 (+) False XLOC_003190
TCONS_00006290 mRNA downstream 42975 6080528 ~ 6101104 (+) False XLOC_003190
TCONS_00006291 mRNA downstream 45368 6082921 ~ 6101104 (+) True XLOC_003190
TCONS_00006292 mRNA downstream 78068 6115621 ~ 6124508 (+) False XLOC_003191
TCONS_00006273 other upstream 110501 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 502666 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 552358 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 2065933 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2520134 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006299 other downstream 98768 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 171617 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 172358 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 290425 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 824699 6862252 ~ 6862368 (+) True XLOC_003212

Expression Profile

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