RNA id: TCONS_00006285


Basic Information

Item Value
RNA id TCONS_00006285
length 953
lncRNA type retained_intron
GC content 0.43
exon number 4
gene id XLOC_003189
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6069875 ~ 6074783 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGAGCCAAATCAAAGGTAACCATGggtcaactttggcccgcgggctcTATATTGGGGATCTCTGCACTGGAGGAAGAGTAAAAAGTGGGTAAATCTTTATTTTGGGTGACATATCGCTTAATGTTAATAATAGAAACACCacatgtgtgtgtacctgtgagcgggtctgcagctggatatgtCTCCCACCACCCCCTGCAGTGCTGAAGCTGATCTCCGGTGGAGTAGCAATGGAGTTTATTTTTCGCTACATTTTAAGCCACAGGTAAAGAAAATAGCGAGGAAGAAGAGAAAACGACGCTATTTGTCAGTCTAGCTACATGtatatgtgctgCCGAAGCAAGCACGAACTAGGAGCCTGGAGAACTGCTATATAAACCCGGGACTTCTGGGCATGCGCGGACCTTCCCCCGCCGCAGACCAGAGGACAACATGCTCAGACGCCAGCAAACGGCCCATCGAAACATTCACAGACTCTCGGAGGCTAAAGAAGATCTCGAAAGACCTGAAAAGCTGAGATCAAAGCAGCCATTGAACTCACAGCCGAAGAAACGTTCAAGCTAATGTGAAGGCTAGTGCTTCAGCTTCATGTGCTGAGTAACATTCTCAGGCGTAGCGTAGCgtatttttaatgctttaaatgaGGTTTAGTTGCACCGAAATGAGTCGTAATGATGAATATTTCTCAACTATATCTTACTTATACACTCTTTTATCTGCATAGCTTAAAAGAGGGGTATTTCTAtcaaaaaatgaaagtttactcatcatttactccacCGTTAACCCAgcttgagtttcttttttgtAGTTAAGCACGAAAGAAAATGTTATGAAGAATGCTGGACATGGGTAGCAATTGATATCTATGGAGGAATGAAATTCCACACAGAAAGCTACACAGGaaggatgcatttatttaatttaaaaataaagcagtaATACTGTGAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0060900 embryonic camera-type eye formation biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0021983 pituitary gland development biological_process
GO:0061061 muscle structure development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008522 lncRNA upstream 103502 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00006289 lncRNA downstream 3830 6076764 ~ 6079207 (+) False XLOC_003190
TCONS_00006298 lncRNA downstream 63361 6136295 ~ 6141322 (+) False XLOC_003192
TCONS_00006303 lncRNA downstream 133035 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00006304 lncRNA downstream 133423 6206357 ~ 6220937 (+) False XLOC_003195
TCONS_00008531 lncRNA downstream 141009 6213943 ~ 6223299 (+) False XLOC_003195
TCONS_00006280 mRNA upstream 32132 6010177 ~ 6037759 (+) False XLOC_003188
TCONS_00006279 mRNA upstream 32152 6010177 ~ 6037739 (+) False XLOC_003188
TCONS_00006278 mRNA upstream 32179 6009984 ~ 6037712 (+) False XLOC_003188
TCONS_00006282 mRNA upstream 32402 6010291 ~ 6037489 (+) False XLOC_003188
TCONS_00006281 mRNA upstream 47294 6010191 ~ 6022597 (+) False XLOC_003188
TCONS_00006287 mRNA downstream 3712 6076646 ~ 6098974 (+) False XLOC_003190
TCONS_00006288 mRNA downstream 3760 6076694 ~ 6079855 (+) False XLOC_003190
TCONS_00006290 mRNA downstream 7594 6080528 ~ 6101104 (+) False XLOC_003190
TCONS_00006291 mRNA downstream 9987 6082921 ~ 6101104 (+) True XLOC_003190
TCONS_00006292 mRNA downstream 42687 6115621 ~ 6124508 (+) False XLOC_003191
TCONS_00006283 other upstream 32338 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006273 other upstream 146150 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 538315 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 588007 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 2101582 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006299 other downstream 63387 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 136236 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 136977 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 255044 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 789318 6862252 ~ 6862368 (+) True XLOC_003212

Expression Profile

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