RNA id: TCONS_00062990


Basic Information

Item Value
RNA id TCONS_00062990
length 5474
RNA type mRNA
GC content 0.48
exon number 29
gene id XLOC_032253
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41255485 ~ 41446053 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGGATCCATCCTCCAGCGAAGAGGAATCGGACGGGATAGTGGAGGAAGAAAGCCGAGAGGTGATGGCACCTCAGTCCGGCTCCTCTCGCATCTCCCCCAGCAGGACCAGCGAGAGCTCCGACAGGCTTCAGCCCTCTAGCCGAGGCTCCAGCGCCCGACCGACCAGCCCGAGCCCGTCGGCCGCCAGCGAGGAGAAGGAGgacgtggagaagctgcagaggGAAGAGGAGGAACGGAAGAAGAAGCTGCAACTCTACGTCTTTGTGATGAGATGCATCGCCTACCCTTTCAACGCCAAGCAGCCGACCGACATGGCAAGGCGACAGCTGAAGATTACCAAGCAGCAGCTGCAGACGACCAAGGACCGCTTCGAGTCTTTTCTGAAAGGAGACACACAGATTGTGGCGGATGAGGCCTTCATCAATGCCGTTCAGAGCTATTTTGAGGTTTTTCTAAAGAGTGACCGTGTTGCTAAGATGGTCCAGACGGGAGGTTTATCCGCTCTTGATTGTCGTGAGGTGTTCAAGCGCCACATCGAGAAGCGTGTCCGGAGTCTGCCAGAGATCGATGGTCTTAGCAAGGAGACTGTGCTGAGCTCTTGGATGGCCAAGTTTGACACAATCTACCGTGGAGACGAGGACCCACGCAAAGCCCAGCAGCGCATGACAGCCAGCGCCGCATCCGAGCTCATCCTGAGCAAAGACCAGCTCTACGAGATGTTCCAGCAGATCCTGGGCATCAAGAAGTTTGAGCACCAGCTGCTCTACCAGGCTTGCCAGTTGGATAATCTGGACGAGCAGGCCGCTCAGATCAGGAGAGAGCTGGACGGCCGTCTGCAGATGGCTGATCAGATTGCCCGGGCTGGCAAGTTCCTGAAGTTCGTGTCGAAGGAGATGGAGGCGATGTACATCGAGGAGCTGAAGAGCTCAGTCAACCAGCTGATGGCCAATCTGGAGAGCATGCCAGTCTCCAAGGGCGGAGAGTTCAAGCTGCAGAAGCTCAAGAGGGGACATAACACCTCCATCATTGATATGGGCCAGGAAGATGAAAACCAGCTGTCCAAGTCTGATGTTGTGCTGTCTTTCACACTCGAGGTGGTGATTATGGAGGTTCAGGGGTTGAAGTCGCTGGCTCCCAATCGCATTGTGTACTGTACGATGGAGGTGGAGGGTGGACAGAAGCTACAGACGGACCAGGCCGAGGCTTCCAAACCAACcTGGGGAACTCAAGGAGACTTCACCACCACACATCCTCTGCCTGCAGTCAAGGTGAAGCTTTTCACAGAGAGCACAGGCGTTCTGGCCCTGGAGGACAAGGAGCTCGGCCGGGTGGTTCTTCACCCGACTCCAAACAGTCCAAAGCAGGCAGAGCTCCACAAGATGACTGTAACCAAGGCCTGTCCTGATCAAGATCTGAAGATCAAACTCGCTGTTCGCATGGACAAGCCTCAGAACATGAAGGCTTGTGGGTATTTATGGGCTGTTGGCAAAAATGTCTGGAAACGCTGGAAGAAGCGCTTCTTTGTCCTGGTCCAGGTAAGTCAGTATACCTTCGCCATGTGCAGCTATCGAGAGAAGAAGTCAGAGCCACAGGAGCTGCTACAATTAGATGGCTATACTGTGGACTACACCGACCCACAGCCAGGTCTGGATGGAGGCCGAGCTTTCTTCAATGCAGTGAAAGAGGGAGACACTGTGATCTTTGCCAGTGATGATGAGCAGGACCGCATCCTATGGGTGCAGGCCATGTATCGAGCGACTGGCCAATCACATAAACCCGTCCCGCCCACGCAGGTCCAGAAACTCAATTCAAAGGGCAAAGCTGCGGCTCAGATGGACGCCCCCATCTCTCAGTTCTATGCTGACAGGGCACAGAAGCACGGCATGGATGAGTTTATCTCAGCTAACCCATGTAGCTTTGATCATGCCTCATTGTTCGAGATGATGCAGAGGCTCACGCTGGACCACAGGCTCAATGACAACTTTGCATGTCTGGGCTGGTTCAGCCCAGGTCAGGTGTTTGTTCTGGATGAGTACTGCGCCAGAAATGGGGTGAGAGGATGCCATAGACATCTGTGTTATCTTGGAGACCTGCTGGAGCGGGCAGACGCCGGGCACATGATTGACCCTACGCTGCTGCACTACAGCTTCGCTTTCTGTGCCTCTCATGTTCATGGAAACAGGCCGGATGGTCTTGGAACAGTAACGGTGGAGGAGAAAGAGCGGTTTGAGGAAATCAAAGAGCGATTACGTGTCCTTCTGGAGAACCAGATCACAAACTTTAGGTATTGCTTTCCATTTGGTCGCCCTGAGGGAGCATTGAAAGCCACTCTGTCTTTGCTGGAGAGGgtaCTTATGAAGGACATTGTGACCCCCGTGCCGCAGGAAGAAGTCAAGGCTGTCATTCGTAAATGCCTAGAGCAAGCAGCTCAAATTAACTACCAGCGCATCACTGACTACGCCAGAGTGGAAGtCGAGAAAACTCTAAAGGATCAGAAGGATCCAGAGAATGTAGCTAACCTAGCTACACCTGCTAAAAAACTGGAGCATGTCATCCGCCTGGCAGAGTTAGTCATTGAGGTTCTACATCAGAACCAGGATCATCACGCAGAGGCTGCGGTCACAAGTACAGGAGACCAATCGGCCTTTGCATGGTGGTCAGATCTGATGGTGGAGCACGCTGAGAACTTCCTGTCGCTCTACGGTGTTGATATGGACGCTGCTCTCGAGATCCAGTCTCCTGAGAGCTGGGACAGTTTCCCGCTCTTTCAACTTCTAAACGATTTCCTCCGTACCGACTATCACCTGTGTAACGGAAAGTTTCACAAGCATCTGCAGGACCTGTACGCTCCACTTGTGGTGCGATATGTGGATCTTATGGAGTCCTCGATCGCTCAGTCCATTCACAGGGGATTTGAGAGGGAGTCATGGGAGCCTGTAAACAATGGCTCGGGAACATCAGAAGATCTGTTCTGGAAGTTAGATGCCCTACAGACCTTCATCAGGGACCTACACTGGCCAGAAGAAGAGTTTGCCAAGCACTTGGACAACCGTATGAAGCTCATGTCAAGTGACATGATTGAGACAAGCGTTAAACGCACGAGGGGAGCGTTTGAATCAAAGCTGACTAAAAGCAGCCGCTCCACAGACTTCCGCATCCCACTGTCCTTATGCACCATGTTCAATGTGATGGTGGACGCCAAGGACCAGTCTGCTAAACTCTGTGCCATGGAAATGGGCCAGGAGAAACAGTATCATTCTCAAATCGATGAACTTATTGAAGAGAGTGTAAAAGATATGATTGCCCTTTTGGTGGCGAAGTTTGTGGCCATTCTGGAGAGCGTACTTGCCAAGATCTCCAGGTATGATGAAGGAACACTCTTCTCCTCGTTCCTTTCCTTCACGgTGAAAGCAGCATCAAAATATGTGGAAGTccctAAACCAGGGATGGACGTTGCGGATGGCTATGTGACCTTTGTCCGTCACTCTCAGGACATTCTGAGAGATAAGGTCAATGAGGAGGTGTATATAGAGAGATTATTTGATCAATGGTATACAGCCACAATGAATCTGCTGGCGACCTGGCTGACTGAACGCATGGACCAACAGCTTCATGTCTATCAACTCAAAATCCTCATCAGGATTGTAAAGAAGAAATACCGGGATTTTAGACTGCAGGGTGTCCTTGATTCGACGTTGAACAGCAAGTCGTATGACACAGTACGAAACCGGCTAACGCTGGAAGAAGCCACGGCCTCGGTCAGAGAGGGAGGCATGCAGGGCATCTCCATGAAGGACAGCGATGAGGAGGACGAGGAGGACTAAAGGAGCATCGAGCCATCCGGTGCCACCCACCACCCTGAACCTAACCCGTCTATCCAACCCTACCCCACCCCAACACTTTAAACTTAGCCTGATAACATAAGATGCATGTAACAACTCTGATTACCCAGTTAGCCACTTTAGGACCCCCTCCCTCCCCATCAGCTCGAGTTGCCCacaaacaaagctaaaaaaaacaataagaatcAAATAATTGTACTAACGAAGAGTATAAAAAGAATGTCGCGAAGACCACGATTGGCAATTTTAGCTGTGTCATAACATAATAAAGAACAACGAACTAGCACCGACTTTTTCAACTCATTTATTTGAGGAATTTGTTTCTATGTGTTCCTAAGCAATATGGAGTACCATTTGTTTGATAATGTCGAGTGAGATTATTAGGTGTGTCCCTGTCCAATGCGATAACATATATGGCGCTTCTTTGACGTACTCTTACATACATTAATGGTACATTGTTGTGAAGATGAGTGTATGGACCCTTTTCTTTGTCTTGTCTGTTTTTAAAGTGGATGCCAACTGCTTCGAAACTAAAAACGAACCTCTGTATTTCAGTTCAAACTGTTAACCGTAAATGTCTTCTGTGTCTGCACACTTCCATCGTACTATTTCCTTATTTGTGTCAAGGCTCTGTGGCCCTATTTGTTGCAGAATATCCAACTAGTCATTGTCTCACAGGCAtctcaaaatgaaaatgaattggtATTCTAGAAATGCAATATCGTCATACCTCCGTTTTGATATCTCATTGGAGACGTCTTTTGATTAGATGTCGCAAAAAGACAAGGAAAACGGCTATATTTTTGGTTGAGTTCTACACTTCTACGGAggatctctctctatctctctcttttttaagtTTGTATGTCCaattaaagtcattctctttATGTTAGTAGGTCTGTCGAAAATGCTATGTGCCATTTTTGGGGTCTCACTTTTGGTTTTGTATATATGATGCTGTACATTGCATTCTGAGCCATTGCTGCATGCCTGTGGGATCCACCTTCTCcaaaagcttttttgtttttctttgtcgATTAGCTGGTGGATTCATTCTTGCGTTTGCCTTATCAAAGCCAACAGTTGTAATATGCAAGAGCTGTGGCCTCTCAATAAAGATAACATGATGTACTAAAATACCTGTACATTTAATTTCATGGTCTGGTTTCATCTTAGTTTGCTAGTATGTCCTTACCTATTTTAAATACCGAATAAGAAGAAAATGTAGGGTGAGAATTCCTTTTTGTCTGCTTAGAATTGATCGGATTGTGATTTATATAGAGCACAACATTTGGAGTTACTCATATTTTTATCAATAACACTTAACCCTTTAAATACAGATGGTTTTGAGGTTGTTGTGTGTGCTTTAGTTGAACCCTGTTCATATCAGTTCAAGTACTATAGTTCAAGCACTATTATTTGGATAATAGTGGAATTTAGGccaaaaactacattacccataacaTTCAACAAATTTAAATTTCTTCAGCAATCGAAGTGCACCAAAATAGATCTTTAATTCTTCCCACCCACCATGCAGCACTGCTTATTCTACAATACAAGTTTttacaaataattacaaatatattgTTTCTATTCAGTCAACAATTTTATACTAACTGGAA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:1990504 dense core granule exocytosis biological_process
GO:0045921 positive regulation of exocytosis biological_process
GO:0098978 glutamatergic synapse cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110621-2 Predicted to enable metal ion binding activity. Predicted to be involved in exocytosis and positive regulation of exocytosis. Predicted to act upstream of or within dense core granule exocytosis; protein transport; and synaptic vesicle exocytosis. Predicted to be located in cytoplasmic vesicle. Predicted to be active in glutamatergic synapse. Orthologous to human CADPS (calcium dependent secretion activator).

Ensembl:

ensembl_id ENSDART00000186013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 153299 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 172618 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 269468 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 414702 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 591286 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 59062 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 188016 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 188126 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 245041 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 319585 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062988 mRNA upstream 53049 41200500 ~ 41202554 (+) True XLOC_032252
TCONS_00062986 mRNA upstream 62184 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062985 mRNA upstream 66143 41186320 ~ 41189460 (+) True XLOC_032249
TCONS_00062984 mRNA upstream 71780 41181869 ~ 41183823 (+) True XLOC_032248
TCONS_00062983 mRNA upstream 94586 41144203 ~ 41161017 (+) True XLOC_032247
TCONS_00062991 mRNA downstream 488 41446541 ~ 41451844 (+) False XLOC_032254
TCONS_00062992 mRNA downstream 497 41446550 ~ 41451493 (+) False XLOC_032254
TCONS_00062993 mRNA downstream 554 41446607 ~ 41451309 (+) True XLOC_032254
TCONS_00062994 mRNA downstream 6926 41452979 ~ 41461390 (+) True XLOC_032255
TCONS_00062997 mRNA downstream 17733 41463786 ~ 41501766 (+) True XLOC_032257
TCONS_00062987 other upstream 60802 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 708628 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1206158 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1883728 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2397301 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062995 other downstream 8738 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 17732 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 407319 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 551910 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 716597 42162650 ~ 42162774 (+) True XLOC_032266

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006464 True 1059 mRNA 0.58 6 CM030134.1 5210028 ~ 5231466 (+)