RNA id: TCONS_00006289


Basic Information

Item Value
RNA id TCONS_00006289
length 249
lncRNA type retained_intron
GC content 0.46
exon number 2
gene id XLOC_003190
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6076646 ~ 6101104 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGcgctttaataattatttatccGCTGCTGAGGAGGACATTATCTGAGGACAGCACCTGAAACCAAAGCAGACAAATGACTGAGAGATCGGACAGTTTGGTGTCAGTGGACTCTGAACTGGCACAGTGTGAGACGGAGGTCAACACTTTACTGCAGATCATCTCTGACCTCAACAGAAAGATGGACTCCCTACAAATACCACGGTAAAACCTGTCTCAAACAACTTCATCAGTCACTGACCACCACTTC

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-121024-2 Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1).

Ensembl:

ensembl_id ENSDART00000161273

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006284 lncRNA upstream 1981 6069875 ~ 6074783 (+) False XLOC_003189
TCONS_00008528 lncRNA upstream 1981 6069883 ~ 6074783 (+) False XLOC_003189
TCONS_00008529 lncRNA upstream 1981 6070459 ~ 6074783 (+) False XLOC_003189
TCONS_00008530 lncRNA upstream 1981 6072085 ~ 6074783 (+) True XLOC_003189
TCONS_00006286 lncRNA upstream 3683 6070160 ~ 6073081 (+) False XLOC_003189
TCONS_00006298 lncRNA downstream 57088 6136295 ~ 6141322 (+) False XLOC_003192
TCONS_00006303 lncRNA downstream 126762 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00006304 lncRNA downstream 127150 6206357 ~ 6220937 (+) False XLOC_003195
TCONS_00008531 lncRNA downstream 134736 6213943 ~ 6223299 (+) False XLOC_003195
TCONS_00008385 lncRNA downstream 134887 6214094 ~ 6224042 (+) True XLOC_003195
TCONS_00006280 mRNA upstream 39005 6010177 ~ 6037759 (+) False XLOC_003188
TCONS_00006279 mRNA upstream 39025 6010177 ~ 6037739 (+) False XLOC_003188
TCONS_00006278 mRNA upstream 39052 6009984 ~ 6037712 (+) False XLOC_003188
TCONS_00006282 mRNA upstream 39275 6010291 ~ 6037489 (+) False XLOC_003188
TCONS_00006281 mRNA upstream 54167 6010191 ~ 6022597 (+) False XLOC_003188
TCONS_00006290 mRNA downstream 1321 6080528 ~ 6101104 (+) False XLOC_003190
TCONS_00006291 mRNA downstream 3714 6082921 ~ 6101104 (+) True XLOC_003190
TCONS_00006292 mRNA downstream 36414 6115621 ~ 6124508 (+) False XLOC_003191
TCONS_00006293 mRNA downstream 36462 6115669 ~ 6133580 (+) False XLOC_003191
TCONS_00006294 mRNA downstream 36470 6115677 ~ 6117377 (+) False XLOC_003191
TCONS_00006283 other upstream 39211 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006273 other upstream 153023 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 545188 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 594880 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 2108455 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006299 other downstream 57114 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 129963 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 130704 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 248771 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 783045 6862252 ~ 6862368 (+) True XLOC_003212

Expression Profile

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