RNA id: TCONS_00006301


Basic Information

Item Value
RNA id TCONS_00006301
length 1699
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_003193
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6152643 ~ 6175057 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATGAACGAGAAGCCTCCAAACAGCACTAGTCTGTTTCTGAGCGAAGACTCTGAGAAGCCGCAGCGCGCTGACGAAGGCCTCCACCGCCTGTGCCGAGTGTTACAGAAACAGATGTCTGGAAGCAGGAGAAAGATGGGCGGCATCACACGAAACAGCGTCAAGACGTTCCTGCGGAGGAACGCATTTGTGATCTTCACCGTGGCTGCTGTGGCTTTGGGGGTGGCACTGGGGTTTGCCCTGAGACCTCATAATCTGTCCATCAGGCAGGTGAAGTACTTCTCTTTCCCTGGAGAGCTGCTGATGAGGATGCTTCAGATGCTTGTTCTTCCGCTGATCGTCTCCAGCCTTGTCACAGgAATCTCATCTTTAGACAGCAAGGCCTCTGGGAAGATGGGAATTCGGGCCATCGTTTACTACATGGTGACCACATTAATTGCAGTTTTCATCGGCATTGTGATGGTGATCATCATCAAACCGGGTAAAGGCAGCAGAGATAGTCCAGTGGCCTCTAGTGGCAGCATTGAACCAGTGCAGGCCGCAGATGCCTTCCTGGACCTTATAAGAAATATGTTTCCACCAAATTTAGTTGAAGCCTGCTTTAAACAGTACAAAACACTATACAAGAAAACCGTGCTGACAAAAAATGTCACCATCGTGGTCAATGCGACAGAGAACGTCAACTCTACTGATCTCAGCCAAGTGTCCAACTTCAGCCCAGTCTTGCAGACCATCCAGGAGACGGTGGAGGAGGCTGTCCCAGTCTCTGGCTCCTCCAATGGGGTGAACGCCTTGGGCTTGGTGGTTTTCTCCATGTGCTTTGGATTAGTGATCGGAAACATGAAACAGCAGGGCCAGGCTCTCCGGGACTTCTTCGACTGCCTGAATGAAGCTATTATGCGCTTGGTGGCCATCATAATTTGGTACGCTCCAGTGGGAATCCTCTTCCTGATAGCGGGGAAGATAGTGGAGATGAAGGATCTGGCTCAGGTTGGAGGACAGTTAGGGATGTACACGGTGTCTGTGATTGTGGGGCTGCTCATCCACGGCCTGTTGGTTCTGCCTCTGCTCTTCTTCGTGGTGACCAAGAAGAACCCGTTCACCTTCATTGCCGGGCTGCTGCAGGCTCTCATCACTGCTTTGGGCACTTCATCAAGCTCTGCCACCCTGCCCATTACTTTTCGTTGTCTCGAAGAAAACAACCACGTGGACAAAAGAGTGACACGTTTTGTGCTTCCGGTCGGAGCCACAATCAACATGGATGGCACAGCTTTATACGAAGCAGTGGCAGCCATCTTCATCGCTCAGGTCAACGACATGGATCTGAACTTTGGCCAGATCCTCACCATCAGTATTACAGCAACCGCCGCTAGCATCGGAGCAGCAGGCATCCCTCAGGCTGGGCTGGTTACTATGGTGATAGTATTGACATCGGTGGGACTTCCCACAGAGGACATTACCCTGATCATCGCTGTGGACTGGTTCCTGGATCGACTCAGGACCACCACCAACGTGCTGGGAGATTCGTTTGGCGCCGGAATTGTTGAGCATCTGTCGCGGCAGGAACTTCAGAACCAAGACGTAGAAATCAGCAACTCTGTGATCGAGGAAAATGAGAAGCCGTACCAGCTGATCTGTCAGGAGAACGACTCTCTCAAACACCGCAACAGTGAAACCACCATGTAACAATCCTCGCCCGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
ko04724 Glutamatergic synapse
ko04721 Synaptic vesicle cycle
ko05017 Spinocerebellar ataxia
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-071004-45 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; cerebellum; optic tectum; and telencephalon. Orthologous to human SLC1A6 (solute carrier family 1 member 6).

Ensembl:

ensembl_id ENSDART00000178367

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006298 lncRNA upstream 18273 6136295 ~ 6141322 (+) False XLOC_003192
TCONS_00006289 lncRNA upstream 80388 6076764 ~ 6079207 (+) False XLOC_003190
TCONS_00008529 lncRNA upstream 84812 6070459 ~ 6074783 (+) False XLOC_003189
TCONS_00008530 lncRNA upstream 84812 6072085 ~ 6074783 (+) True XLOC_003189
TCONS_00006286 lncRNA upstream 86514 6070160 ~ 6073081 (+) False XLOC_003189
TCONS_00006303 lncRNA downstream 31216 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00006304 lncRNA downstream 31604 6206357 ~ 6220937 (+) False XLOC_003195
TCONS_00008531 lncRNA downstream 39190 6213943 ~ 6223299 (+) False XLOC_003195
TCONS_00008385 lncRNA downstream 39341 6214094 ~ 6224042 (+) True XLOC_003195
TCONS_00006309 lncRNA downstream 148245 6322998 ~ 6324302 (+) True XLOC_003198
TCONS_00006297 mRNA upstream 14437 6136220 ~ 6145158 (+) False XLOC_003192
TCONS_00006296 mRNA upstream 25012 6116503 ~ 6134583 (+) True XLOC_003191
TCONS_00006293 mRNA upstream 26015 6115669 ~ 6133580 (+) False XLOC_003191
TCONS_00006307 mRNA downstream 106894 6281647 ~ 6293709 (+) True XLOC_003196
TCONS_00006308 mRNA downstream 120617 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006311 mRNA downstream 199695 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006312 mRNA downstream 247621 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006313 mRNA downstream 256380 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006299 other upstream 14952 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 122042 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006273 other upstream 235854 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 628019 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 677711 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006305 other downstream 34417 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 35158 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006310 other downstream 153225 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 687499 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 975236 7149989 ~ 7150082 (+) False XLOC_003217

Expression Profile

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