RNA id: TCONS_00006309


Basic Information

Item Value
RNA id TCONS_00006309
length 1305
lncRNA type lincRNA
GC content 0.39
exon number 1
gene id XLOC_003198
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6322998 ~ 6324302 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCATGTTGTGAGCTAGTGTGAGTCAGACATCACTCATGCGGTTCATTACTGCCGGCCAACGTACACAAAGCTGACTGTGACTCCCGCACAATCAAGTCAAAGAAGGGCTTTTCCCACTCTGCTGCTGAATATTCTCAAAATACTGCCAGTGACAGGTACTCATGTAGCATTATTCACCAGATGTGAACAAAGAACAATGTGTGGTGCACTGTCTGACTGTTTCTGTCCACACGCACGCTATAATAAGTCTGTCTGATCATTTGTAAAAAGAGGTCAAATAAGCACCGTTTAGGTCTAAACACGATTTATTAGTTTCATAGTAAGATAATCtttaaatattctttattttGAATTCAAATGTTACTAAAACTAAGAAGAGAGATGTGTAGATTTGTTGGTCAAGATGCTAAATATATCCTTCGTAACAGCATTAGCTAGTTTAAAAGCAATTATTTGTTTTCGTCACGTGTGCAGACGTTGAGCTTTAGTGTTTTTACCAACTATGGCACTTaattgttgtgttttgtgtttgtgtttcttttatcACGTCCTTCTGGTGCTCGGCTTCAGAATGTTCGTGTTTCCATATagttactgtagacatttcccgTCAATATGAAAGCAGGGCTAAAGGTTTACAAAACAGATGTTCGCTCATGCGAGTGGATTGCTGTAAATGTCTGTAAATGTTTACATTCACTGTGTTGCAGCAGATGTACTATAAGAAACGcataccccccaccccccaccccccccttTTGGGTCGTTTGTGTAGATCTCAGAGAGACTGTGAACTAGCCAGTGCTATTTCTGGCCCTGAATAACTCCACTGCACTGGTCTTGTGGTTTAAATCTACAATTTGACTCTGGTGGAAGTGTTTAGCGTTCATTTTGAAGGGCTAGGCTGCTATTGGACTAAACATCTGCTGATTTCACTGGAATATGTCATTTGTTGGCCACAAATTCCAAACGTGTGATAAAGGTCAATTGTGGATATATATTTGGTCTGTTATAGACATTTCTGTTTTCCATTAAACAACTTGTACCATTATAAAACCTTAACCTGAAATATGCAAATAATCTTGTCTTCTTTTCATCCAATTTTTAAGGCATTCAAGTAATCTCTCGTTTCTCTTTTCCTGTTCATTTGCAGCTTGTTTAGCCCACCTATTCATTTCTGCTGATATCacagtatatataaaaacatgatGCTGCTTTTAAGTCACATTATTCTTCCAGTTGGAAACCTGTACCACCTTTGACTGTCATTTCATAAAGTCTCCTCTGTTTTGTCTGTTCTCTCT

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166904

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006303 lncRNA upstream 98878 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00008385 lncRNA upstream 98956 6214094 ~ 6224042 (+) True XLOC_003195
TCONS_00008531 lncRNA upstream 99699 6213943 ~ 6223299 (+) False XLOC_003195
TCONS_00006304 lncRNA upstream 102061 6206357 ~ 6220937 (+) False XLOC_003195
TCONS_00006298 lncRNA upstream 181676 6136295 ~ 6141322 (+) False XLOC_003192
TCONS_00006314 lncRNA downstream 119155 6443457 ~ 6444163 (+) True XLOC_003203
TCONS_00006316 lncRNA downstream 131846 6456148 ~ 6457303 (+) False XLOC_003204
TCONS_00006317 lncRNA downstream 131858 6456160 ~ 6457261 (+) False XLOC_003204
TCONS_00006318 lncRNA downstream 131869 6456171 ~ 6457195 (+) True XLOC_003204
TCONS_00008532 lncRNA downstream 136322 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00006308 mRNA upstream 6280 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006307 mRNA upstream 29289 6281647 ~ 6293709 (+) True XLOC_003196
TCONS_00006302 mRNA upstream 117631 6169312 ~ 6205367 (+) True XLOC_003194
TCONS_00006300 mRNA upstream 147941 6152643 ~ 6175057 (+) False XLOC_003193
TCONS_00006301 mRNA upstream 148245 6159595 ~ 6174753 (+) True XLOC_003193
TCONS_00006311 mRNA downstream 50146 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006312 mRNA downstream 98072 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006313 mRNA downstream 106831 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006315 mRNA downstream 131844 6456146 ~ 6457748 (+) False XLOC_003204
TCONS_00006320 mRNA downstream 326664 6650966 ~ 6656271 (+) False XLOC_003207
TCONS_00006305 other upstream 99699 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 99699 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 178355 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 285445 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006273 other upstream 399257 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006310 other downstream 3676 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 537950 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 825687 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 825972 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 826245 7150547 ~ 7150640 (+) True XLOC_003217

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU120549 True 2967 lncRNA 0.38 3 NC_056709.1 13410492 ~ 13651018 (+)