RNA id: TCONS_00006314


Basic Information

Item Value
RNA id TCONS_00006314
length 707
lncRNA type lincRNA
GC content 0.37
exon number 1
gene id XLOC_003203
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6443457 ~ 6444163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgggaggcacatatgcaaactgttgtaattcctacagcgttcacctgttctggatgtaaataccctcaaattaaagctgacagtccgTAAAGCATGTCTTGTTCATTTCAAAACGATTATGTTAGTGTATAGAGCCAAACAAATTATAGTATTGTGTcggtccaaatatttatggacctaactgtacacacacacacacacacacacatggaaatCTTCTATATTTGACTTTATTTCAGTTGTGCAGATGAAATTGTTATACCAATTTAATACAAAGGTATGATGTTGTTCACTTGTTTTGCTGCTCTTTTTAATTCGGCCTAGAAAAATGAAGTCTATGCAAGCCTGTTATGTTTTGCCATATTTATACAGTCAGGCTCCGGAAAGCCAAATGGAGGGGAGCCATaatgtagtgaatgagtgtactGATGACGCGGCATTATTCATGTACAGCGTGTCATTTGTCCTGTTAAGATGTGATGGTTATACAATATTTTTCCGTGTTCGCTTTAAGAGTTACCTACGGTACTGAACTACAGCATGGTAATGTTACATATTGGGGCATGTCATATGTGTCTTGCTAGTGCCCTGTACAGGAGTGTTTATTTTCTCTAGATAGACGGTAAAACAGTGCCTAAAAGACTCATGGTTACTTGTTAAATGGATTTATTCTGGaaaattctaataaattattttggTATTCTTCA

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0048856 anatomical structure development biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0040011 locomotion biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0022008 neurogenesis biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0043236 laminin binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165862

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006309 lncRNA upstream 119155 6322998 ~ 6324302 (+) True XLOC_003198
TCONS_00006303 lncRNA upstream 219337 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00008385 lncRNA upstream 219415 6214094 ~ 6224042 (+) True XLOC_003195
TCONS_00008531 lncRNA upstream 220158 6213943 ~ 6223299 (+) False XLOC_003195
TCONS_00006304 lncRNA upstream 222520 6206357 ~ 6220937 (+) False XLOC_003195
TCONS_00006316 lncRNA downstream 11985 6456148 ~ 6457303 (+) False XLOC_003204
TCONS_00006317 lncRNA downstream 11997 6456160 ~ 6457261 (+) False XLOC_003204
TCONS_00006318 lncRNA downstream 12008 6456171 ~ 6457195 (+) True XLOC_003204
TCONS_00008532 lncRNA downstream 16461 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00006319 lncRNA downstream 16461 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00006313 mRNA upstream 8857 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006312 mRNA upstream 20297 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006311 mRNA upstream 65387 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006308 mRNA upstream 126739 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006307 mRNA upstream 149748 6281647 ~ 6293709 (+) True XLOC_003196
TCONS_00006315 mRNA downstream 11983 6456146 ~ 6457748 (+) False XLOC_003204
TCONS_00006320 mRNA downstream 206803 6650966 ~ 6656271 (+) False XLOC_003207
TCONS_00006323 mRNA downstream 240805 6684968 ~ 6793375 (+) False XLOC_003209
TCONS_00006324 mRNA downstream 295270 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006325 mRNA downstream 308305 6752468 ~ 6792892 (+) False XLOC_003209
TCONS_00006310 other upstream 115364 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 220158 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 220158 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 298814 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 405904 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006329 other downstream 418089 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 705826 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 706111 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 706384 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 706657 7150820 ~ 7150906 (+) True XLOC_003218

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279516 True 971 lncRNA 0.36 1 CI01000057 4207963 ~ 4208933 (-)