RNA id: TCONS_00006315


Basic Information

Item Value
RNA id TCONS_00006315
length 1295
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_003204
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6456146 ~ 6457748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACCAACTTCTCAGGCACAGAGAAACGAGCAAAGGAATACTGCAACTCCTAGCGACTTTTGGATTATACTCCGAACACTATACACACTTTGACTGGATTTTAATATTTCCGAGTTTATCCGGAGACTTGTGGATTACCACTATTTGAAGCAAAATGACCCTGGAAGAAGTCGTTGGATGCAACATTACTGATACAAAAATGGACACCGTGAGCCAAGCATTGGAAGAGCTGCTGGTAGCAGCGCAGAGGCAGGACTGTCTCACAGTCGGCGTTTATGAGTCTGCAAAACTAATGAATGTAGATCCAGACTGCGTTGTGTTGTGCATTCTGGCCACCGATGAGGAGGATCTGGACGACATTGCGCTGCAGATTCACTTCACGCTCCTGCAGGCGTTCTGCTGCGATAACGACATCAACATCCTGCGGGTGTCCGGACTGAGACGCCTGGCACAGGTGCTCGACGAGCCGGCCACCGTGGAAAACAGCGAGCCCAGAGATTTCCACTGCATCCTCGTCACTAACTCTCAATGCCAGCCTCTCAAATGCCAGGCACTGAAGGACGTGGGCACCTACTGTGAGGAGAGCCGTTGCAAAAACCAATGGATTCCTTATCTGTCCCTGCAAGAACGCTGAACTATTCGCGATGCTGTTTCTGCAACGAAAGGATGAAAGAGTCATTCTCTGCGAATGAAAGCAAACGGGCTCTGCAACAGCCGCCGTTGACTGCTGCGTCATGGGGATGGAGCTGTGTGAGAGAAAGTGGAGCTCCTGGAACTGTGCGCATGGTACATTCCACCCTGCCCCTTCAGCTTGTCGTGTCCTCTGTGGGGGAAAAGAAGTGGTCGTTTTTGGTAGCGGAGGAACAAGTTGTGGGAACATGAGCTGTGAAAGCTGCCTGTCGGCGCAAGCTGTGCGAGAGAACTTGCACGCGGGCGGCGTGGGCGCGCGCCCAAGCCTCATATGTGCAATGGGGTTGGAAAGCGACGGGTGTATACGTCACTATCGCTGAATGCGGGACGAACATTTTGAAAGACTGAGCTAATAATCTGTGTATGTGCTGGATATTGTATCTGATAGTTGCCTATCAGTATCTGCAAATGGACTGAAATCGCTTCTGTTTGTCTGCACTGAAAAGGACCGTGTTTGTGGAAAACAAAATCTGTTGAGCTAATGAGAAATGCATACTATGAATTGATGTAATTTATTCCTAGTAATTTAAACAGAGTAATATATACATTGCTGCTCATGTCAAATGCAATGCTGTTTCAATAAATTATTGATTGAGAATTTAAA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0046686 response to cadmium ion biological_process
GO:1904633 regulation of glomerular visceral epithelial cell apoptotic process biological_process
GO:0051597 response to methylmercury biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1971 Acts upstream of or within several processes, including regulation of glomerular visceral epithelial cell apoptotic process; response to methylmercury; and somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; axis; cleithrum; mesoderm; and nervous system. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

Ensembl:

ensembl_id ENSDART00000036939

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006314 lncRNA upstream 11983 6443457 ~ 6444163 (+) True XLOC_003203
TCONS_00006309 lncRNA upstream 131844 6322998 ~ 6324302 (+) True XLOC_003198
TCONS_00006303 lncRNA upstream 232026 6205969 ~ 6224120 (+) False XLOC_003195
TCONS_00008532 lncRNA downstream 2876 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00006319 lncRNA downstream 2876 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00008533 lncRNA downstream 178674 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00006321 lncRNA downstream 193386 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00006322 lncRNA downstream 200908 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006313 mRNA upstream 21546 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006312 mRNA upstream 32986 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006311 mRNA upstream 78076 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006308 mRNA upstream 139428 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006307 mRNA upstream 162437 6281647 ~ 6293709 (+) True XLOC_003196
TCONS_00006320 mRNA downstream 193218 6650966 ~ 6656271 (+) False XLOC_003207
TCONS_00006323 mRNA downstream 227220 6684968 ~ 6793375 (+) False XLOC_003209
TCONS_00006324 mRNA downstream 281685 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006325 mRNA downstream 294720 6752468 ~ 6792892 (+) False XLOC_003209
TCONS_00006326 mRNA downstream 294720 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006310 other upstream 128053 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 232847 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 232847 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 311503 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 418593 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006329 other downstream 404504 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 692241 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 692526 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 692799 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 693072 7150820 ~ 7150906 (+) True XLOC_003218

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04218508_04219283.mRNA True 1265 mRNA 0.48 4 CI01000057 4218334 ~ 4219894 (+)