Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006316 |
| length | 951 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_003204 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6456146 ~ 6457748 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001756 | somitogenesis | biological_process |
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0000185 | activation of MAPKKK activity | biological_process |
| GO:0046686 | response to cadmium ion | biological_process |
| GO:1904633 | regulation of glomerular visceral epithelial cell apoptotic process | biological_process |
| GO:0051597 | response to methylmercury | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-1971 | Acts upstream of or within several processes, including regulation of glomerular visceral epithelial cell apoptotic process; response to methylmercury; and somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including EVL; axis; cleithrum; mesoderm; and nervous system. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta). |
| ensembl_id | ENSDART00000140707 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006314 | lncRNA | upstream | 11985 | 6443457 ~ 6444163 (+) | True | XLOC_003203 |
| TCONS_00006309 | lncRNA | upstream | 131846 | 6322998 ~ 6324302 (+) | True | XLOC_003198 |
| TCONS_00006303 | lncRNA | upstream | 232028 | 6205969 ~ 6224120 (+) | False | XLOC_003195 |
| TCONS_00008532 | lncRNA | downstream | 3321 | 6460624 ~ 6513018 (+) | False | XLOC_003205 |
| TCONS_00006319 | lncRNA | downstream | 3321 | 6460624 ~ 6513018 (+) | True | XLOC_003205 |
| TCONS_00008533 | lncRNA | downstream | 179119 | 6636422 ~ 6642487 (+) | True | XLOC_003206 |
| TCONS_00006321 | lncRNA | downstream | 193831 | 6651134 ~ 6653623 (+) | True | XLOC_003207 |
| TCONS_00006322 | lncRNA | downstream | 201353 | 6658656 ~ 6678209 (+) | True | XLOC_003208 |
| TCONS_00006313 | mRNA | upstream | 21548 | 6431133 ~ 6434600 (+) | True | XLOC_003202 |
| TCONS_00006312 | mRNA | upstream | 32988 | 6422374 ~ 6423160 (+) | True | XLOC_003201 |
| TCONS_00006311 | mRNA | upstream | 78078 | 6374448 ~ 6378070 (+) | True | XLOC_003200 |
| TCONS_00006308 | mRNA | upstream | 139430 | 6295370 ~ 6316718 (+) | True | XLOC_003197 |
| TCONS_00006307 | mRNA | upstream | 162439 | 6281647 ~ 6293709 (+) | True | XLOC_003196 |
| TCONS_00006320 | mRNA | downstream | 193663 | 6650966 ~ 6656271 (+) | False | XLOC_003207 |
| TCONS_00006323 | mRNA | downstream | 227665 | 6684968 ~ 6793375 (+) | False | XLOC_003209 |
| TCONS_00006324 | mRNA | downstream | 282130 | 6739433 ~ 6792892 (+) | False | XLOC_003209 |
| TCONS_00006325 | mRNA | downstream | 295165 | 6752468 ~ 6792892 (+) | False | XLOC_003209 |
| TCONS_00006326 | mRNA | downstream | 295165 | 6752468 ~ 6794144 (+) | False | XLOC_003209 |
| TCONS_00006310 | other | upstream | 128055 | 6327978 ~ 6328093 (+) | True | XLOC_003199 |
| TCONS_00006305 | other | upstream | 232849 | 6209170 ~ 6223299 (+) | False | XLOC_003195 |
| TCONS_00006306 | other | upstream | 232849 | 6209911 ~ 6223299 (+) | False | XLOC_003195 |
| TCONS_00006299 | other | upstream | 311505 | 6136321 ~ 6144643 (+) | True | XLOC_003192 |
| TCONS_00006283 | other | upstream | 418595 | 6034242 ~ 6037553 (+) | True | XLOC_003188 |
| TCONS_00006329 | other | downstream | 404949 | 6862252 ~ 6862368 (+) | True | XLOC_003212 |
| TCONS_00006340 | other | downstream | 692686 | 7149989 ~ 7150082 (+) | False | XLOC_003217 |
| TCONS_00006341 | other | downstream | 692971 | 7150274 ~ 7150366 (+) | False | XLOC_003217 |
| TCONS_00006342 | other | downstream | 693244 | 7150547 ~ 7150640 (+) | True | XLOC_003217 |
| TCONS_00006343 | other | downstream | 693517 | 7150820 ~ 7150906 (+) | True | XLOC_003218 |
