RNA id: TCONS_00008533


Basic Information

Item Value
RNA id TCONS_00008533
length 803
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_003206
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6636422 ~ 6642487 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGAAGTTTCTTGTGTTGTTTGAGCCTCGATCTTGACATACTATAGTGTTGAAAAATGCGCAGTGCACCATATTTTCCTCAGTTTGTGTTATCAACACTGATAGGCTCAGGGACAAAGCGCTCAGACAGAGGAGGCAGGTCATGTCTTGACAGTCACATGATCAGAGGCGTCCGGCCCCTTGAGAAGTAGGCCATGGGATTACAGCAGGCACATTCACGTCTCAGCCGGAGACATCTGAACCACACAGGCTACAGACGCATCCAATACAAACAGGCATGTTTACAGCCAAAAGCAATAGATTCCCTAAATCTGCTGAGAGGTTTTGATTTCCAGGCAACATTGAACATCTATTAGGTGTTCAGATCAACTGTACAAAAACATACTGTAAATAAGCAAGCACCGCCTTCCTAGTCCAGTGTCATATATCGCTGCTGGAGCATTCAAGTTATATTGGGAAgtagaattattaaccccttaaaTTTTACTCACTATATTGCAATTAAACCCTAATCTGATCAGGACAAATGATATATTACCCGAATATATTGAATATTTGAAAGGTCTTCTGAATACCTAACCGttactttgttgttgtttttttttggtatgtTGGAATTATGTAAGAGATCAAAATCCATTTACTGTCACCCTGTGGAATCGTCTGCAGATATATTTTGAAACCATATTATTGTAcccccaaaaataaaactttcatGGCAAAATATATATCATATGAAAGCTTAAATTGTCTAGTTTCCATATACCGTGACTTGATTTTTTGCAGATATCACTAAGCAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008532 lncRNA upstream 123404 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00006319 lncRNA upstream 123404 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00006316 lncRNA upstream 179119 6456148 ~ 6457303 (+) False XLOC_003204
TCONS_00006317 lncRNA upstream 179161 6456160 ~ 6457261 (+) False XLOC_003204
TCONS_00006318 lncRNA upstream 179227 6456171 ~ 6457195 (+) True XLOC_003204
TCONS_00006321 lncRNA downstream 8647 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00006322 lncRNA downstream 16169 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00008386 lncRNA downstream 165609 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006335 lncRNA downstream 304104 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 304310 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006315 mRNA upstream 178674 6456146 ~ 6457748 (+) False XLOC_003204
TCONS_00006313 mRNA upstream 201822 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006312 mRNA upstream 213262 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006311 mRNA upstream 258352 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006308 mRNA upstream 319704 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006320 mRNA downstream 8479 6650966 ~ 6656271 (+) False XLOC_003207
TCONS_00006323 mRNA downstream 42481 6684968 ~ 6793375 (+) False XLOC_003209
TCONS_00006324 mRNA downstream 96946 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006325 mRNA downstream 109981 6752468 ~ 6792892 (+) False XLOC_003209
TCONS_00006326 mRNA downstream 109981 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006310 other upstream 308329 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 413123 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 413123 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 491779 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 598869 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006329 other downstream 219765 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 507502 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 507787 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 508060 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 508333 7150820 ~ 7150906 (+) True XLOC_003218

Expression Profile

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