RNA id: TCONS_00006325


Basic Information

Item Value
RNA id TCONS_00006325
length 2082
RNA type mRNA
GC content 0.50
exon number 15
gene id XLOC_003209
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6684968 ~ 6794144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTTTGCCAACCGGCTGTCTTCCACCGGCTGACCGCACTTTCAAAGTTCGGAGTGTCAATCTGTGCGGCTCCCCGTGTGCTGTCAACTGTCCAATTGACATTGTGCAGAAACGCAGGCGTTTCGATGTGGAAAATGGGTTGTCGATGGGTCGCAGTTCACTGGACCCCAGTCCGAGCTCCGGGCTGGTCCTGCAGGCAAACAGCCAGAGGCGAGAGTCTTTCCTGTACCGCTCAGACTCGGATTTTGACCTCTCGCCCAAGACGATGTCCAGAAACTCCTCGACCGCCAGCGAGCTTCATGGAGAGGACATGATTGTAACGCCGTTTGCTCAGgtTCTTGCCAGTCTACGTACAGTGAGAGGAAATGTTGCAGCTTTAACCCACATGCAAGACAGAAGCAACAAgAGACCATCAGGCACTAACCCTCAATCTGCCTGTAAAACAAACCTGTCCGATGAAGCATATCAAAAACTGACCGTCGAGACTCTTGAAGAGCTGGACTGGTGTTTGGACCAGCTGGAGACGCTGCAAACACGTCACTCCGTCAGTGAAATGGCCTCCAATAAgTTTAAAAGAATGCTCAACAGGGAACTTACTCAGCTGTCGGAGACCAGCCGCTCAGGAAACCAGGTGTCTGAGTTCATAGCAAGCACAATATTACAAAAACAGTACGATGTGGAGCTTCTGTCGGCAGCATGTAAGGAGGAGAAGAAGCGTCGGCCGATGTCTCAGATTAGCGGAGTGAGAAAACTAAGCCCCAGTCCGAGTCTCCCCCCAACATGCATCCCACGGTTTGGTGTCAACACGCAGCACGAGAGCCTCCTGGCCAAGGAGCTTGAGGACTTGGATCGATGGGgtatagatatttttaagatagcAGAATATTCTGGGAATCGGCCACTCACAGTGATGATGTACACCATTTTTCAGGAGCGAGATTTACTCAAAACCTTTAAAATCCCATCGGACACCTTCTTAACATTCCTGATGACCCTGGAAGATCACTACCATGCGGACGTGGCCTATCATAACAACATCCACGCAGCAGATGTTGTTCAGTCCACACACGTTCTTCTCTCCACACCTGCCCTAGAGGATGTGTTCACAGACCTGGAGATCATGGCCGCTCTGTTTGCTAGCGCTATACATGATGTCGATCATCCAGGAGTGACCAACCAGTTCCTCATTAACACAAACTCTGAACTGGCTCTCATGTATAATGATGCTTCAGTATTGGAGAATCATCATTTGGCGGTGGGCTTCAAGCTTCTGCAGGAGGAGAATTGTGATATCTTCTGCAATCTGAGCAAGAAACAGCGGCAGTCCCTGCGACAAATGACTATAGATATGGTTTTAGCGACTGACATGTCCAAACACATGAATTTCCTGGCAGACCTGAAGACAATGGTGGAAACTAAAAAAGTGACCAGTCAAGGAGTCTTACTACTGGACAACTACTCAGACCGAATACAGGTTCTACAGAACATGGTGCACTGCGCTGACCTCAGCAACCCCACAAAACCCCTGGAGCTCTACAGAAAGTGGACAGATCGCATCATGGTGGAGTTCTTTAGTCAGGGGGACCGCGAGCGGGACAAGGGCATAGACGTCAGTCCTATGTGTGACAAACACACAGCTTCAATGGAAAACACTCAGGTGGGATTCATTGATTACATTATCCACCCTTTATGGGAAACATGGGCTGATCTGGTCCATCCAGATGCTCAGGACATTCTAGATACATTAGAGGACAATCGAGAATGGTATCAGAGTATGATCCCACGCAGCCCCTCGCCAACCCCTGAAGAGCAGGACTCACGGCCCACAGGGGTCACAGGCTCAGCTGGAGAAAAGTTCCAGTTCGAGCTTACTCTGGAGGAAGAGGATGGAGAGTTAGAGACTGAAGAAGAGCACACAGATATAGAAAGATCGAGGACTATGACTGATCCTGAGCATCCACAAACGTCCCCTCTTGGAATCACTACCATTTTAGACAGCAGCGAAAGAGAACTGGATCAGGAACTGACCAGTGTGTCCGCCCTGCAGTTGGAAACCAGTAGTAGCAGCACTCATGAATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4075 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4C (phosphodiesterase 4C).

Ensembl:

ensembl_id ENSDART00000187046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006322 lncRNA upstream 74259 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 98845 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00008533 lncRNA upstream 109981 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00008532 lncRNA upstream 239450 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00008386 lncRNA downstream 15204 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006335 lncRNA downstream 153699 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 153905 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006337 lncRNA downstream 302284 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006338 lncRNA downstream 356179 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00006320 mRNA upstream 96197 6650966 ~ 6656271 (+) False XLOC_003207
TCONS_00006315 mRNA upstream 294720 6456146 ~ 6457748 (+) False XLOC_003204
TCONS_00006313 mRNA upstream 317868 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006312 mRNA upstream 329308 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006311 mRNA upstream 374398 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006328 mRNA downstream 26158 6819050 ~ 6850593 (+) True XLOC_003211
TCONS_00006330 mRNA downstream 88109 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006331 mRNA downstream 89157 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA downstream 89470 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006333 mRNA downstream 109414 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006310 other upstream 424375 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 529169 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 529169 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 607825 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 714915 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006329 other downstream 69360 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 357097 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 357382 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 357655 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 357928 7150820 ~ 7150906 (+) True XLOC_003218