RNA id: TCONS_00006328


Basic Information

Item Value
RNA id TCONS_00006328
length 814
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_003211
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6819050 ~ 6850593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGTCTGCAGGTGTTGGAAGAGGCGCAGTATTGGCGTAAGAGACGCTTTAAACGGCTTTTAACGATGGCTTCAGCTACAGACAACCGTTATGGACAAAAGGAGTCTTCTGACCAGAACTTTGATTACATGTTCAAAATCCTAATCATCGGGAATAGCAGCGTTGGGAAGACCAGCTTTCTGTTTCGTTATGCAGACGACTCCTTCACGCCAGCGTTCGTAAGCACGGTCGGCATCGACTTCAAGGTGAAGACCATCTACAGGAACGACAAGAGGATAAAGCTGCAAATCTGGGACACAGCGGGGCAGGAGCGTTACAGAACCATCACCACCGCTTATTACCGTGGAGCCATGGGATTCATCCTCATGTACGACATTACCAATGAGGAGTCTTTCGCTGCAGTGCAGGACTGGTCCACACAGATTAAGACATACTCATGGGATAACGCTCAGGTGCTTCTAGTAGGCAACAAGTGTGACATGGAGGATGAGAGGGTCGTGGCTTCTGAAAGGGGCAGACAGCTCTCTGAGCATCTTGGTTTTGAATATTTCGAAGCCAGTGCCAAGGACAACATTAATGTTAAACAAACCTTCGAGCGGTTGGTGGACATAATCTGCGAGAAGATGTCAGAGAGCCTGGATGCTGCCGATCCTGCAGTGACGGGAGCCAAACAAGGGCCGCAGCTCACAGAGCAGCCCGCCGCCCCGCACCAGGACTGCGCCTGCTGAAAATCCCACAGCTCTGTCTGCACTGCCttgcaccaatacacacacactcacacacggaAAAAACACAAGTTTAGGTATTTAAAAA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0009306 protein secretion biological_process
GO:0048790 maintenance of presynaptic active zone structure biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0031630 regulation of synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007409 axonogenesis biological_process
GO:0005768 endosome cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098993 anchored component of synaptic vesicle membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-268 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000104289

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008386 lncRNA upstream 3045 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 140841 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 165427 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00008533 lncRNA upstream 176563 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00008532 lncRNA upstream 306032 6460624 ~ 6513018 (+) False XLOC_003205
TCONS_00006335 lncRNA downstream 95998 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 96204 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006337 lncRNA downstream 244583 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006338 lncRNA downstream 298478 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA downstream 298595 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00006326 mRNA upstream 24906 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006323 mRNA upstream 25675 6684968 ~ 6793375 (+) False XLOC_003209
TCONS_00006327 mRNA upstream 25675 6764207 ~ 6793375 (+) True XLOC_003209
TCONS_00006324 mRNA upstream 26158 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006325 mRNA upstream 26158 6752468 ~ 6792892 (+) False XLOC_003209
TCONS_00006330 mRNA downstream 30408 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006331 mRNA downstream 31456 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA downstream 31769 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006333 mRNA downstream 51713 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006334 mRNA downstream 52353 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006310 other upstream 490957 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 595751 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 595751 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 674407 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 781497 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006329 other downstream 11659 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 299396 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 299681 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 299954 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 300227 7150820 ~ 7150906 (+) True XLOC_003218

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04443549_04450402.mRNA True 1399 mRNA 0.42 4 CI01000057 4443549 ~ 4451138 (+)
bowfin (Amia calva) AMCG00006074 True 1502 mRNA 0.50 5 CM030142.1 15753228 ~ 15766640 (+)