RNA id: TCONS_00006330


Basic Information

Item Value
RNA id TCONS_00006330
length 928
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_003213
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6881001 ~ 6895981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAACGACCAGAACTTCAAAGACTAAACTCCAACCTATTCTCTGTGACCGAGCATGGTTAGCGGTAATTTGGGCTTCTGCACATGATGACCTTCCTCATCATCTTCCTCGCTGAGCATGGCGGAGTCAGATGGTGTGGAGTTCTTTGCGAATCGAGCTCAAAGCAGCATGGCTGACAACAAGAATAGCGTGCTTCGTTGTACTTTCTCAGCCCCCAGCCACAGCAGCACTCTCCTGAGGGGCTTGTCTGCATTGCGTGATCAAGGTCAGTTGCTGGATGTGGTTCTGGCCATTGACAACGAGCGCTTCGAGGTTCACAAAGCGGTTTTAGCCTCCTGCAGTGACTACTTCAGAGCCATGTTCACTGGTGGAATGAAGGAGTCGAACCAGAACACCATAGAGCTAATAGGTCTTTCGGCTAGAGGACTGAAGCACATCATTGATTTCGCCTACAGTTCTGAAGTCACCCTGGACTTGGACTGCATACAGGATGTTCTCGGTGCAGCTGTCTTTCTGCAGATGGTGCCTGTGGTGGAGCTTTGTGAGGAATTTCTCAAATCTGCCATGAGTGTCGAGACTTGTTTAAACATCGGGCAAATGGCCACCACTTTCAGTCTCTCATCTCTCAAACAGTCAGTCGATGCGTACACGTTCCGTCACTTTCTGCAAATCGCTCAGGAGGACGACTTCCTTCACATTCCAATGGAACGACTGACTTTCTTTCTTCAGAGCAACAAGTTAAAGAACTGTAGCGAGATTGACTTGTTCCATGCGGCAATCCGCTGGCTACAGCATGATGCTTCAAGACGAACTGTGGCCAGCGAAGTGCTCTGCCATGTGCGCTTCCCATTGATGCGATCGTCCGAGCTTGTGGACAGTGTCCAAATTGTCGACATCATGGTGGAAGATGTACAATGTCGACACTTT

Function

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5975 Orthologous to human KLHL26 (kelch like family member 26).

Ensembl:

ensembl_id ENSDART00000170331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008386 lncRNA upstream 64996 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 202792 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 227378 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00008533 lncRNA upstream 238514 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00006319 lncRNA upstream 367983 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00006335 lncRNA downstream 57028 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 57234 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006337 lncRNA downstream 205613 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006338 lncRNA downstream 259508 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA downstream 259625 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00006328 mRNA upstream 30408 6819050 ~ 6850593 (+) True XLOC_003211
TCONS_00006326 mRNA upstream 86857 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006323 mRNA upstream 87626 6684968 ~ 6793375 (+) False XLOC_003209
TCONS_00006327 mRNA upstream 87626 6764207 ~ 6793375 (+) True XLOC_003209
TCONS_00006324 mRNA upstream 88109 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006333 mRNA downstream 12743 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006334 mRNA downstream 13383 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006344 mRNA downstream 269160 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006345 mRNA downstream 293462 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 293509 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006329 other upstream 18633 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006310 other upstream 552908 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 657702 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 657702 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 736358 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006340 other downstream 260426 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 260711 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 260984 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 261257 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006353 other downstream 372441 7262004 ~ 7274378 (+) False XLOC_003222

Expression Profile

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