RNA id: TCONS_00006332


Basic Information

Item Value
RNA id TCONS_00006332
length 2444
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_003213
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6881001 ~ 6895981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCATTGTAATGTGTTGTTTTCCCGATTTTATTAAGACCGAGCATGGTTAGCGGTAATTTGGGCTTCTGCACATGATGACCTTCCTCATCATCTTCCTCGCTGAGCATGGCGGAGTCAGATGGTGTGGAGTTCTTTGCGAATCGAGCTCAAAGCAGCATGGCTGACAACAAGAATAGCGTGCTTCGTTGTACTTTCTCAGCCCCCAGCCACAGCAGCACTCTCCTGAGGGGCTTGTCTGCATTGCGTGATCAAGGTCAGTTGCTGGATGTGGTTCTGGCCATTGACAACGAGCGCTTCGAGGTTCACAAAGCGGTTTTAGCCTCCTGCAGTGACTACTTCAGAGCCATGTTCACTGGTGGAATGAAGGAGTCGAACCAGAACACCATAGAGCTAATAGGTCTTTCGGCTAGAGGACTGAAGCACATCATTGATTTCGCCTACAGTTCTGAAGTCACCCTGGACTTGGACTGCATACAGGATGTTCTCGGTGCAGCTGTCTTTCTGCAGATGGTGCCTGTGGTGGAGCTTTGTGAGGAATTTCTCAAATCTGCCATGAGTGTCGAGACTTGTTTAAACATCGGGCAAATGGCCACCACTTTCAGTCTCTCATCTCTCAAACAGTCAGTCGATGCGTACACGTTCCGTCACTTTCTGCAAATCGCTCAGGAGGACGACTTCCTTCACATTCCAATGGAACGACTGACTTTCTTTCTTCAGAGCAACAAGTTAAAGAACTGTAGCGAGATTGACTTGTTCCATGCGGCAATCCGCTGGCTACAGCATGATGCTTCAAGACGAACTGTGGCCAGCGAAGTGCTCTGCCATGTGCGCTTCCCATTGATGCGATCGTCCGAGCTTGTGGACAGTGTCCAAATTGTCGACATCATGGTGGAAGATGTACAATGTCGACACTTTCTCCTAGAGGCCTTCAATTATCAGATACTTCCATTCCGACAACATGAAATGCAATCACCGCGAACTTCCATTCGCTCAGACATCACATCGCTAATTACTTTCGGCGGGACACCTTACACGGACAACGACCGTACAGTCAGCAGCAAAGTTTATTTTCTTCCCGACATCACAGTTCGACAATTCAAAGAGTTGACCGAAATGGAGATGGGATGCAGCCATGCCTGCGTATCGGTTCTTGACAATTTTGTGTATGTGGTGGGTGGGCAGCATTTGCAGTATCGTAGTGGAGAAGGTGCAGTTGACATCTGCTTCCGCTACGACCCGCATCTAAACCAATGGCTTCGGATTCAACCCATGCAGGAGAGCCGCATTCAGTTTCAACTCAACGTACTTGATGGTCAACTTTACGCTACTGGGGGGCGCAACAGGTCTGGCAGCTTATCATCTGTTGAATGCTATTGTCCAAAGAAGAATGAATGGACTAATGTGGACTCCCTAAAGAGGAGGATCTGGGGTCACGCCGGAGCCACCTGCGGAGACAAGCTTTACATCTCTGGAGGTTATGGAGTGTCTGTGGAAGATAAGAAGACTCTCCATTGCTATGATTCAGCCTTGGATCAGTGGGATTTCAAGTGTCCCATGAATGAACCTAGAGTTCTGCATGCTATGATCAGCGCTAACAATCGTATTTACGCTCTCGGTGGCAGAATGGATCATGTAGACCGTTGCTTTGATGTTCTTGCTGTAGAGTATTACATTCCAGAGACAGACCAATGGACAACTGTCAGTCCGATGCGTGCTGGTCAGTCAGAGGCTGGCTGCTGTTTGCTGGACAAAAAGATCTATATCGTTGGAGGATACAACTGGCATCTTAATAACGTCACAAGTATTGTGCAGGTTTATAATACTGAGACGGATGAGTGGGAAAGAGATCTTCATTTTCCAGAATCTTTTGCAGGAATAGCTTGTACGCCCATAATACTACCCCAAACAACCACTCAGCGCTGAGCACAAAATCTTTCACGATTGCTGTTTTAAGCTCAAGTTACAAGTGCCCACCTGGACAGCATAAGTAATGGAATAAATGTCTATTCATCATTAAAAAATAGACAGCGTAATGTCTTCATTTTCAAGGCATTGATGATTTAAGGTTCGAAACAGTGTACCTAAATAACATTATAGCACAAACTGTCCTTTTTGAGATTGTGCCACTTTCTATATGCTTCTCAATCCTGTGTCATGATGAAGGTTTCAAATAAGTGCCTGTGTGATTTACAATTACGACCAATAACATTGGGGAATATCTTTTTGCCCTTTTAGTAAATGCTTTAAACCCTTCAAGCTACAGGGTTTTAAAACAGGTTCTTGCTGGTGTGGCTAAATGACactagaaaacaaaacaaaacaaaaatgattcattttgaACTATTTATAACTTCAatatatacaaaaacatttatgccaaaaatcattgtAATCTAGTACAGAATCAAgtatttttctgaaaataaataagtCTTGACGGAA

Function

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5975 Orthologous to human KLHL26 (kelch like family member 26).

Ensembl:

ensembl_id ENSDART00000144181

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008386 lncRNA upstream 66357 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 204153 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 228739 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00008533 lncRNA upstream 239875 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00006319 lncRNA upstream 369344 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00006335 lncRNA downstream 55501 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 55707 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006337 lncRNA downstream 204086 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006338 lncRNA downstream 257981 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA downstream 258098 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00006328 mRNA upstream 31769 6819050 ~ 6850593 (+) True XLOC_003211
TCONS_00006326 mRNA upstream 88218 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006327 mRNA upstream 88987 6764207 ~ 6793375 (+) True XLOC_003209
TCONS_00006324 mRNA upstream 89470 6739433 ~ 6792892 (+) False XLOC_003209
TCONS_00006333 mRNA downstream 11216 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006334 mRNA downstream 11856 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006344 mRNA downstream 267633 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006345 mRNA downstream 291935 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 291982 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006329 other upstream 19994 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006310 other upstream 554269 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 659063 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 659063 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 737719 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006340 other downstream 258899 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 259184 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 259457 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 259730 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006353 other downstream 370914 7262004 ~ 7274378 (+) False XLOC_003222

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04473417_04481843.mRNA True 2013 mRNA 0.49 2 CI01000057 4473222 ~ 4481894 (+)
bowfin (Amia calva) AMCG00006104 True 4769 mRNA 0.48 3 CM030142.1 15947208 ~ 15957100 (+)