RNA id: TCONS_00006333


Basic Information

Item Value
RNA id TCONS_00006333
length 2449
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_003214
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6902306 ~ 6958042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatgtaaaaaaataataatcagtatatttacagtgATTAAATTATAATCATCTAGATGTGTGTgcatcgctctctctctctctctctctctctctctctctctctctctctctctctctaaattcAAATTAATTCAATTCGATTCAATAAtggctttattggcatgacaaatgttacaaatttattgccaaagcatttctaAAGTGTACATAAAAAATAGCAtgcacattaaataaaaaacagtaattttttaATATCACAATTAAGCAagaattttgtcttttaaaaccCCATGTTTGtaagttttacttttttatttctttttatttattattattattattattattttaaaatctttgttgtttgtttctttaagGCTTTTCTCTCCAGATATTCCCACGGGCCCCTTAAAATAGCACGCTCTTTGACCTGCTCTCCCTGGACGCCAGTTAGACAATCTCtagcttatttatatttatgttaggCTGCCTGTACAGTCTTGCAGGTTTTTAGACTTTTAGACAGGTGTTTCATCTTCTATGAAGACACACACCAGAGTGTTTTATCAATGGGCGCTCCTGCAGTGGACTGGACTCCAATGCCCACAACTCTTCCCGTGATGATGATGACGCCGCCGCAGCCGCGCGCAACGCGTCTCACGCAACGCTCTGTGTTTTGGAGAAGAACGGAAGATGGCGTCCTCAAACAATCCGCGAAAATTCAGCGAGAAAATCGCCCTGCACAACCAGAAGCAGGCGGAGGAGACCGCGGCGTTTGAGGAGGTCATGAAAGACCTGAGCATCACGCGAGCTGCACGGCTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGCCAGAATCGAGCTCAGTGCTATGGAGGGTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACACTGACCTCCCTTTTCAGACGACAGTTTTAGACACCAATCGGACGTCCCGGCACCATGGCTTGGTGGACCGCGTCTATCGTGACCGGAATCGCATCGCTTCTCCACATCGTAGACCTCTCTCTGTGGACAAGCACGGACGTCAGATTGACAGCTGCCCTTATGGCTCGGTATATCTGTCACCGCCTCCTGACACAAGTTGGCGGAGAACAAACTCTGACTCAGCTCTACACCAGAGCGCTGTGAATCCAGCTCCACAGGACTCTTTTGTTGGTGGATCTCAGGAACTGCAGTCAAAAGGCGTAAAGACATTGCTGTTGCTCACCCCTCCGGACACAGAGGATGCTGAATCAGAAATGGAGAAAGATGATTCCAAGACATCTCTGCTCACAGATTCCTGTGATGTTCCTGGCATTAACATATTTCCCTCTCCCGATGAAGAAATGAATTGCTCCTTGATGCCAGGTGCTCACAGCACAGGCGGCTCTTTACCTGATCTGACAAACATCCAGTTCCCTCCTCCCCTCCCGACCCCACTGGATCCGGACGACCCTATTACCTTTCCTACATCCAGTTCCAGCAGTACCAGCAACCTGACCACCAATCTGACCCACCTGGGGATCAGTGCTGCCAGTCACGTTCCTCCCTCCCCTCCAGCCCAGCACACAGGCTCCGCCCCCTCACCCAGCCTCAGCCAACAGCAAACCACACCCACACTACCGCCTGCTGCCTCTCCTCAGATACCACTTGCACAGCCGATCACGATGGACAGTCTGTTACTGGAGCAGCAGTTGTCTCAGTACTCGCTGCTGAGTTTACTGAACGACCTGCAGAAGCAGCCACACACCCTCCCTCAGAACATCCGTCTCATACGGCTCCCGCCCCTCACCGTAAGCTCCACCCCCAGCACCACCCAGACCTCTCTTGCCAGCCAATCACCGACAACCACAGGTGGAACTGCCAACTCGTACCGCAGTCAGCCTGGCTCTTCAACAAATCAGTCCCCAACATCTCCAGTTTCCAATCAGGGCTTCTCACCTGGTGGTTCACCCCAACATATTCAGGTGGTTGGCAGCATCTTTGGAGATTCGTTCTATGATCAGCAACTTCCCTCCAGACAGACCAATTCCCTGTCAAACCAGCTGGAGCAGTTCAACATGAACATGATGGAGAATCCAGGAAGCACTAGTCCCTGTTCAACACTCAACTACACACAGGCCGCCATGATGGGTTTAACTGGGAGCCACAACAGTCAGCAGGACGCACAGCAGCTGAGCTACAGTAGCCATGGCAACATCCCCAACATCATTCTCACAGTGACGGGGGAGTCTCCTCCCAGTCTCTCCAAAGACCTCACCAGCTCATTGGCCGGCGTTGGTGACGTCAGCTTTGATGCGGACTCGCAGTTCCCATTGGACGAACTGAAGATCGACCCCTTGACACTGGACGGACTGCACATGCTAAACGACCCAGACATGGTTCTCGCCGACCCGGCCACCGAGGACACTTTCCGCATGGATCGACTGTAA

Function

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-266 Predicted to enable cAMP response element binding protein binding activity. Predicted to be involved in positive regulation of CREB transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein homotetramerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human CRTC1 (CREB regulated transcription coactivator 1).

Ensembl:

ensembl_id ENSDART00000075993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008386 lncRNA upstream 86301 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 224097 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 248683 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00008533 lncRNA upstream 259819 6636422 ~ 6642487 (+) True XLOC_003206
TCONS_00006319 lncRNA upstream 389288 6460624 ~ 6513018 (+) True XLOC_003205
TCONS_00006335 lncRNA downstream 12006 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00006336 lncRNA downstream 12212 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006337 lncRNA downstream 160591 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006338 lncRNA downstream 214486 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA downstream 214603 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00006331 mRNA upstream 6325 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA upstream 11216 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006330 mRNA upstream 12743 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006328 mRNA upstream 51713 6819050 ~ 6850593 (+) True XLOC_003211
TCONS_00006326 mRNA upstream 108162 6752468 ~ 6794144 (+) False XLOC_003209
TCONS_00006344 mRNA downstream 224138 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006345 mRNA downstream 248440 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 248487 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006347 mRNA downstream 248500 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006348 mRNA downstream 248546 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006329 other upstream 39938 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006310 other upstream 574213 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 679007 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 679007 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 757663 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006340 other downstream 215404 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 215689 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 215962 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 216235 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006353 other downstream 327419 7262004 ~ 7274378 (+) False XLOC_003222

Expression Profile

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