RNA id: TCONS_00006337


Basic Information

Item Value
RNA id TCONS_00006337
length 2320
lncRNA type lincRNA
GC content 0.42
exon number 3
gene id XLOC_003216
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7095176 ~ 7103536 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGAGAGGAGAGTGGGAGAGACTGAGAGAGAGTAGGAGGAATGAAAATAAGAGTTTATATGCAAGTCAGCACCACAACTGGTGCCCAGCATTTCATCAGCGCACACTCTTGCGTTATGTAAAGGGCGTCAGAGaaAATCGTGGAACTGGAAACCACCAAGTCAAGATTCTTTTGAAtccaaaaaactatttttacatcGCAACAACCCAAACAAAACTATACACTCCTAATtttgctccaaaaaaaaaaaaaaacttttacaatgTTCGCTGTTAACATATCAAATCATTTTATACCTTTTACTAATTGCACTTCTCTAAAATCAATAATTAAGACAGAAAAATGAACAATACAACATTTAAATCAAATGTGATCCTGCTAATATTGGAGAAAACAAGTAACATATTATAATCTtaagtgacttttaaaaaatatgtgttGTTACATTTTAAGTAATATGTAAGTAGCCAACATGTTAGgctatttcttaattttttaaatagtaaaataggcctaaaattgtaatattttacttttttacccAATACAGGATACTGCAGACATTTGCTGTactcattaaaaaagaaaacatgagtTCCTCTATTTTAGAAAAATGGGACTCTTTACCAAGCTGTAATGAACAGTTACCAGAACCCATTTTTAAGACCCCGTCACCCTTTTGGAATCAGGATATAATATTCAAAAGACCAAGACAAGAGTACACACCTGATGCTGTTAGAGAGGCATACAACTTGTATACTTACAGGTGTGATTTAGGCTCTCGTGTAAGTCCGGACCTTCGTTTTGGAGCAGCTCAGACCCACTCTTCTCTAAGTCTAAACTCTTCCAACAGTAGATATCTTCCACCTTCGTCAGAATTACTTGTGACTGATCCAAATATGCTGCATTTTGGAAGAGGACCTTCATACTGGAGGTATTTCACTCCAGAAGCAGGATATGGACTTGTCAAAGGCTTTAGAAAGCTGCGTAATCCACAAACTGACACACTGCCGGCTTCATATTTCTATAGAGGAGTTAACAGGGATGTTTTAAGAAGAGATTTTCCAATGGAGGAAACCCAAACAGGCATGCAAAAGCACAGACTGAGGTATTCACACTGCTACCAAGAACCACAGAGCCAGAGAGTCAGCTCCAAAAGAGACTGTGAGAGATATTATGTTAAAACTAACCCACTTTTAGGTTCTCTCTTACATGCTGATCCAAGTAAAGAACTTTTTAAATACAACTCAGAGCACAGCCAGCACCACCTGCTTGGTTTCAGTAATGATGCTGGGGCTGAAAAGAAAACAAGCGAAGGGCTCCCCCTGCTGCTCTGGAGTGGAGATGCACAAAAACGCAGCAGAAACGCACACGTTAAATCCTCGTCTTCGGCGCTGTGGGTTCTCCGTCGCTTTGTTGAAGGGTCTTTGGTGGAGCTGGAGGGTGGTCGCCTGAAGCGGGTGGAGGATTTGAGGACAGAGGATTTGGAGCTGTGTGCTCAGTTACACCCCGAGCTGATGCTGAAGCGTTTCACTGTGTTGAAGATCATACCGTCACACACACCTGCGCTCTCTAGTTTACGTGTGCAGATTGAGCATGACTACTCGCAGTTGTCTTTGGAGGTGAGTGAAGGAATGCCCTTCTTCGTTTATGGCCACGGCTGGTCCTCCTGTAACCCTCAGCACACAAGTCAAAATTGCAAACTACAGTGCCGCCAGTTAGCGGTGGGTGACTTGTGCCTGGCACTGACACGTATGCCCGCCTCTTCATCAGAGCTGGCCAATCGCAGCCGAAATGAGGTGGGTGAAGATCCCTTGATCCTGAGCAGTCATGCTGAAAACAAGCCCACGCTGCAGATAAAAGATCCATCAAGAAAAAGACGCTTCACAGCTCCAGAGCTCAGGGAGATTTCCAAGATACACCACACtactgattaaaaaaatgaaagactGAATGATATtttctagaatttttttttttaagagaattGCAGTCAGTTTActgttattattgtcattattattggcACTGTAGTCtgtacatcaggggtcaccaatctcggtcctggagggccggtgtccctgcagggtttagctccaacttgcctcaacacacccgcctggatgtttcaagcatacctagtaagaccttgattagcttgttcgggtgtgtttgattagggttggagctaaaatctgcaggacaccggccctccaggaacaagtttggtgaccactgctgtaCATTGTAACTGAATCCTTTCACAAATTAGTGTTTGTACATTTAACTGCACTGTTAATAAATCAGTTACTGTTTTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000130328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006336 lncRNA upstream 138797 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006335 lncRNA upstream 141796 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00008386 lncRNA upstream 279171 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 416967 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006321 lncRNA upstream 441553 6651134 ~ 6653623 (+) True XLOC_003207
TCONS_00006338 lncRNA downstream 45535 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA downstream 45652 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00008535 lncRNA downstream 45756 7149292 ~ 7152007 (+) False XLOC_003217
TCONS_00008536 lncRNA downstream 45806 7149342 ~ 7152007 (+) False XLOC_003217
TCONS_00008537 lncRNA downstream 45909 7149445 ~ 7152007 (+) False XLOC_003217
TCONS_00006334 mRNA upstream 137134 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006333 mRNA upstream 160591 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006331 mRNA upstream 199195 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA upstream 204086 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006330 mRNA upstream 205613 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006344 mRNA downstream 55187 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006345 mRNA downstream 79489 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 79536 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006347 mRNA downstream 79549 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006348 mRNA downstream 79595 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006329 other upstream 232808 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006310 other upstream 767083 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 871877 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 871877 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 950533 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006340 other downstream 46453 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 46738 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 47011 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006343 other downstream 47284 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006353 other downstream 158468 7262004 ~ 7274378 (+) False XLOC_003222

Expression Profile

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