RNA id: TCONS_00006344


Basic Information

Item Value
RNA id TCONS_00006344
length 1395
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_003219
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7158723 ~ 7179516 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGCGAGTCTCTTTAAGATCTGTTCATGCGGTAAGGTCAGAACATCATGGAGGTGTTAGATGTCCTAAATCTGGGCGAAATCGCCCAGTATTTCTCGAAAATGGCGATGTTTCCAGTTTttgatgttgcttattatatcgtGTCAATACTCTACCTCAAATATGAACCAGGTGCTGTGGAAGTGTCCCGCAGGAGTCCAGTGGCCTCATGGCTCTGTGCAATGCTATACTGCTTCGGGAGCTATATACTAGCAGACATCATGCTTGGCGTGTGTCCCATCGACTATTTCCATAACAATAGTCACATCCTCCTGGCCTCAGCTGTGTGGTACTTGATTTTCTTCTGCCCTCTTAACCTGTTCTACAAATGTGTGGCGTTCATGCCTGTGAAACTCGTGCTGGTGGCTTTGAAAGAAGTAGTCCGTACTCGTAAAATCGCAGCCGGAGTCCATCACGCTCACCATGCGTATCACCACGGCTGGCTGATCATGGTCATCACTGGTTATGTCAAGGGGTCAGGGGTTGCTCTCATGTCCAATTTCGAGCAGCTGCTGCGAGGAGTCTGGAAGCCGGAGACCAATGAAGTCCTGAACATGTCATTccctaCCAAGGCCAGTCTGTATGGAGCCATTTTATTCACTCTCCAGGAGGCTCACGTGCTCCCTGTGTCGAAGAGCACACTCATCTGCCTCTTCACACTTTTCATGGTCTCATCCAAGGTGTTCATGACAGCTCGTCACTCTCATGGATCGCCCTTCGCCCTCATCGAGTCTTGGGTGTGCCACGTGCTATTCGGTTCCCCCCTGGGTACCGAAGACGCCCATGATCACCACCATGCTGCTCCAGCTGCTGCCCCTGCACCCCTCTCTCCTGCCAAAAACAAGGAGGAACTGAGCGAAGGAACCCGCAAGAGGAAGTCAAAGAAAGCAGAGTAGATTCACAACACAGTCATCAACCCAATCTGTCATACAGCAGAGCGCCTCAGTTCTGCTTCAGAAAGGATGGAATTTGATGTTAAACCAATGAGCTTCTCTTTCAATGGTGCTTTTTAACGACAGACATGCCACGTAGGGACTCTGTAAATAGCTTCCCCCTCTTTGCCAGCGTctgtgtctttatttatttttcataatgtttCCCATCAGCAAAAGTCCTGTTTATCTGATGATGTGCAGACACGTCACGAACAGATGAATGATCGAAAAGCAGCGAGATGAGAATCTGCTTCCATCCTTTTGAGTTCACAAATCAAGGAAGGGTCCGTAGAAATAAGACTTAATTGTCCACTGCTGGTTGACCCTAAATTCCACAGCACACTGCTGCTTTTTACATCTAGTTGCAttgaacaaaacaatatattttccaaaactgaattaaataatttttcaacCAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005261 cation channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1888 Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

Ensembl:

ensembl_id ENSDART00000035560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006338 lncRNA upstream 6716 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA upstream 6716 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00008535 lncRNA upstream 6716 7149292 ~ 7152007 (+) False XLOC_003217
TCONS_00008536 lncRNA upstream 6716 7149342 ~ 7152007 (+) False XLOC_003217
TCONS_00008537 lncRNA upstream 6716 7149445 ~ 7152007 (+) False XLOC_003217
TCONS_00006350 lncRNA downstream 35158 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008546 lncRNA downstream 101723 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 540823 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 602998 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 645837 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006334 mRNA upstream 200681 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006333 mRNA upstream 224138 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006331 mRNA upstream 262742 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA upstream 267633 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006330 mRNA upstream 269160 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006345 mRNA downstream 3509 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 3556 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006347 mRNA downstream 3569 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006348 mRNA downstream 3615 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006349 mRNA downstream 34837 7214353 ~ 7246987 (+) False XLOC_003221
TCONS_00006343 other upstream 7817 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 8083 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 8357 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 8641 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006329 other upstream 296355 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006353 other downstream 82488 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006384 other downstream 2718997 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 4088374 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 4092418 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4166287 11345803 ~ 11346099 (+) True XLOC_003250

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_00517452_00527181.mRNA True 2816 mRNA 0.42 6 CI01000058 517150 ~ 528807 (+)