RNA id: TCONS_00006346


Basic Information

Item Value
RNA id TCONS_00006346
length 589
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_003220
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7183025 ~ 7212097 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGTTATTATAGGTGCTTTGAATCGTTGGTACACGCGGTGTTCTGATTGAGTCGAGAAATGGCACCTACAGtccAGCGGAACATGTTGGATTTTCCTCAACACGTGTCCTCCAGTAAGGACGTCCGTTCAGCAAGCACCGAGGCTGATAAGAAGCTGTCAGAGTTTGATGTGGAGATGAGCATGAGAGAAGATGTTTATCAGCGAATCGTGGCTCTAGAGGAGAAGCTGCCAGAAGGCAGTTTGTCGCCTGAGGCCAAGCGTTACATGGAAAGACTTATAAAGCTTGGCAAGAGAAACGGCCTCCATCTTCCCAAAGTGACACAGGAGGAGATCAAAAAGATCAAGAAGAAACTGAGCACCCTGTGTATCGATTTCAACAAACACCTGAATGAAGATACAACTTGCCTGCATTTCTCTCGAGAGGAGCTTGGGGGGCTCCCTGAGGATTTCCTTAACTCTCTGGAGAAGGATGAGTCTGGAAAACTGAAGCTCACTCTGAAGTATCCTCATTATTTCCCCACCATGAAAAAATGCTTTGTCCCCGAGACACGGAAGAAATTAGAGGAGGCCTTCAACTCGCGCTGCAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko04614 Renin-angiotensin system
ko05143 African trypanosomiasis
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040718-47 Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in lens. Orthologous to human THOP1 (thimet oligopeptidase 1).

Ensembl:

ensembl_id ENSDART00000154009

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008542 lncRNA upstream 31065 7149606 ~ 7152007 (+) False XLOC_003217
TCONS_00008544 lncRNA upstream 31065 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008543 lncRNA upstream 31065 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008545 lncRNA upstream 31065 7149699 ~ 7152007 (+) False XLOC_003217
TCONS_00006339 lncRNA upstream 31921 7149896 ~ 7151151 (+) False XLOC_003217
TCONS_00006350 lncRNA downstream 19921 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008546 lncRNA downstream 86486 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 525586 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 587761 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 630600 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006344 mRNA upstream 3556 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006334 mRNA upstream 225030 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006333 mRNA upstream 248487 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006331 mRNA upstream 287091 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006349 mRNA downstream 19600 7214353 ~ 7246987 (+) False XLOC_003221
TCONS_00006351 mRNA downstream 67228 7261981 ~ 7274369 (+) False XLOC_003222
TCONS_00006352 mRNA downstream 67248 7262001 ~ 7272056 (+) False XLOC_003222
TCONS_00006354 mRNA downstream 69704 7264457 ~ 7272303 (+) True XLOC_003222
TCONS_00006355 mRNA downstream 82071 7276824 ~ 7279558 (+) False XLOC_003223
TCONS_00006343 other upstream 32166 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 32432 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 32706 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 32990 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006329 other upstream 320704 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006353 other downstream 67251 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006384 other downstream 2703760 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 4073137 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 4077181 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4151050 11345803 ~ 11346099 (+) True XLOC_003250

Expression Profile

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