RNA id: TCONS_00006350


Basic Information

Item Value
RNA id TCONS_00006350
length 811
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_003221
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7214353 ~ 7246987 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTGATTCTCTGCAGCCTACTTCCAGAATGGTGCGGGTGTTCATCAGCTCCACTCACTCAGACATGAAAAATGAGAGAAATGCATTCTGGGAGAAGACCTATTCGGAGCTACAGACCCACTGCCAAAGTTTGGGTCTTGTTTTTGAGGTAGTGGATTTCAAATGTGGAATGCGTGACATCACTGCATCTGATCATTTAATAACTGAACTGTGCATTAAAGAAATCGAAACCTGCCAGAGGATATCAGATGGGCCAACTTTTATAgctttGATCGGTAATCAGTATGGCCATCGCCTTGTCCCGCGCCTCATACCAGAGGCAGAGTTTGAGTTGCTGCTATCAAAACTTTCCAAAGATCCAGAGAGTTTAAAGCTCCTTAACCAATGGTTTTACAAGGACAGTAACTCAATCCCACCCACATATATCCTCCTGCCAATCACGGTGCACTACCCACATTACAATGAGAGAGATTCTGAGAACGCACAGTTGCGGGATAATGATGTCATATCCTGGAATCTAACAGAGTCACGGCTGCTGCAGGTTCTCCGCAGTGCAGCTCTACAGGCTGAGAGAGACGGGGATTTCACTGCTGACAGCAAGCACAAGTTTTTCAAATCTggtaagacattttttaaatgtttcatggATATGCAGAATAGGGCCTAAATCTTATTTCCAACCTGGTGAATTTTTGGAAGAATTCCATTCCaattagatcaggggtgcccaaactttttcttttgaaaaaccaaacttgattgaggctagtgggctgaaggtaaatatagttgccattggtaatttccta

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-071116-8 Orthologous to human NWD1 (NACHT and WD repeat domain containing 1).

Ensembl:

ensembl_id ENSDART00000153651

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006338 lncRNA upstream 62667 7149071 ~ 7152007 (+) False XLOC_003217
TCONS_00008534 lncRNA upstream 62667 7149188 ~ 7152007 (+) False XLOC_003217
TCONS_00008535 lncRNA upstream 62667 7149292 ~ 7152007 (+) False XLOC_003217
TCONS_00008536 lncRNA upstream 62667 7149342 ~ 7152007 (+) False XLOC_003217
TCONS_00008537 lncRNA upstream 62667 7149445 ~ 7152007 (+) False XLOC_003217
TCONS_00008546 lncRNA downstream 61879 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 500979 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 563154 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 605993 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 660782 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006345 mRNA upstream 2577 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006348 mRNA upstream 2775 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006347 mRNA upstream 19712 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006346 mRNA upstream 19921 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006344 mRNA upstream 35158 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006351 mRNA downstream 42621 7261981 ~ 7274369 (+) False XLOC_003222
TCONS_00006352 mRNA downstream 42641 7262001 ~ 7272056 (+) False XLOC_003222
TCONS_00006354 mRNA downstream 45097 7264457 ~ 7272303 (+) True XLOC_003222
TCONS_00006355 mRNA downstream 57464 7276824 ~ 7279558 (+) False XLOC_003223
TCONS_00006356 mRNA downstream 57623 7276983 ~ 7279664 (+) False XLOC_003223
TCONS_00006343 other upstream 63768 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 64034 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 64308 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 64592 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006329 other upstream 352306 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006353 other downstream 42644 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006384 other downstream 2679153 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 4048530 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 4052574 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4126443 11345803 ~ 11346099 (+) True XLOC_003250

Expression Profile

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