RNA id: TCONS_00006351


Basic Information

Item Value
RNA id TCONS_00006351
length 1412
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_003222
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7261981 ~ 7274378 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCGAAACTATCCTAGACGACTAATTAAACGCCATTCATGTTCTTCGTATAACGACACGAGTTTATTTTAAGTCACCATGTTTGCCATATTTACAAAGATTAAGGACCGCGTCGAGGCTTTTTTAAACGAGAAGAATATTGTCACCGACTGTCTCaataaaattgaagaaaaaaCTGGTATCAAGAAACGTTACTTAGCGTACGGTGCTGCAGGTGTGACTGgagcatttttattattaggatACGGCGCTTCTCTGATCTGTAATCTGATTGGCTTTGTTTATCCTGCATATTTCTCtatCAAAGCCATAGAAAGTCCTGGTAAAGAGGATGACACGCAGTGGCTCACGTACTGGGTAATCTACGGCTTCTTCAGCGTGGGAGAATTCTTCTCGGATATCTTTCTTCACTGGTTTCCATTCTACTATGTATGCAAGTGCCTGTTCCTGTTGTGGTGTATGGCTCCGGTCTCCTGGAATGGTTCTCAGGTTCTGTATAGGCATGTGGTCCGTCCATTTTTCCTGAAGCACGAAGCCGCAGTAGACGGGATGGTCAGCAATATAAGCGTGAAGGCCATGTCAGCAGCTGAGAACGTCACGAGAGAAGTCCTTCACACTCTGGTAAGAAACCGGACTGTTGGCCCAGCTGAGTCTGAACCCAGAAGCCTGCCTAGTTCTGCTCATACTGAACCCACTGTTGATTAAACAaTGTACAGGCGGCCAAAGTGATCTAAGAAGACAGAATACAACACGACATGCAAGAGATTGGTGAAAACCTAAACAAAACTTTGACAACAGAAGTATTATATAGTCTCATTGCAAAGACCTCACTGAGTGAATGGTAATTCACCTTCATCTGCACTATTTTAGACGTAGTGTTTTGTCAAAGGTGGAGTTCTGGAGTTCAACGGTTaatatgaagtgctatgaatactttctggatgcactgtatatctgCTTATAATTAGAATATGTCAGTGTCctcaacacaatagtttggaagTCATTTGTTGTTCACTGCACATATTTCGTCCACTGGCATTTAAAGGGAAAATTCagccaaaaatctaaattctgtcatcatttactcactcttcaaaTGTTCAGAACCTATTTGAGTTCCTTCAAGtagaatatatttttgtaaatgctGGTAGTTGACACCCTATGACTTCAACAGGCTCCAGTAACCTGCATTCTTCAAAAAATAtcctttttgtgttcaacagaagaaagaaacttataaaggtttaaaaagcaGTTGGCGGAACGATCCCTTTAAATATAACTGAATAGAAAAACAAGACATTCAGCAGATGATATTTTGTTTATCATGTAGCATTAATTTGCATGTATTGCATCTGCAGGGATTTTGTAATACTAATATtctaataaaaagtttattcagTCTT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030665 clathrin-coated vesicle membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-98 Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6).

Ensembl:

ensembl_id ENSDART00000130400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006350 lncRNA upstream 42621 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008542 lncRNA upstream 109974 7149606 ~ 7152007 (+) False XLOC_003217
TCONS_00008544 lncRNA upstream 109974 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008543 lncRNA upstream 109974 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008545 lncRNA upstream 109974 7149699 ~ 7152007 (+) False XLOC_003217
TCONS_00008546 lncRNA downstream 6870 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 445970 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 508145 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 550984 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 605773 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006349 mRNA upstream 14994 7214353 ~ 7246987 (+) False XLOC_003221
TCONS_00006345 mRNA upstream 49884 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006348 mRNA upstream 50082 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006347 mRNA upstream 67019 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006346 mRNA upstream 67228 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006355 mRNA downstream 2455 7276824 ~ 7279558 (+) False XLOC_003223
TCONS_00006356 mRNA downstream 2614 7276983 ~ 7279664 (+) False XLOC_003223
TCONS_00006357 mRNA downstream 2656 7277025 ~ 7279416 (+) False XLOC_003223
TCONS_00006358 mRNA downstream 2663 7277032 ~ 7280259 (+) False XLOC_003223
TCONS_00006359 mRNA downstream 2701 7277070 ~ 7279537 (+) True XLOC_003223
TCONS_00006343 other upstream 111075 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 111341 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 111615 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 111899 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006329 other upstream 399613 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006384 other downstream 2624144 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3993521 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3997565 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4071434 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 4098517 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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