Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006354 |
| length | 817 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | XLOC_003222 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 7261981 ~ 7274378 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007275 | multicellular organism development | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0030665 | clathrin-coated vesicle membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040912-98 | Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6). |
| ensembl_id | ENSDART00000154182 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006350 | lncRNA | upstream | 45097 | 7214674 ~ 7219360 (+) | True | XLOC_003221 |
| TCONS_00008544 | lncRNA | upstream | 112450 | 7149669 ~ 7152007 (+) | False | XLOC_003217 |
| TCONS_00008546 | lncRNA | downstream | 8936 | 7281239 ~ 7286310 (+) | True | XLOC_003224 |
| TCONS_00006366 | lncRNA | downstream | 448036 | 7720339 ~ 7722326 (+) | True | XLOC_003226 |
| TCONS_00006367 | lncRNA | downstream | 510211 | 7782514 ~ 7783314 (+) | True | XLOC_003227 |
| TCONS_00008388 | lncRNA | downstream | 553050 | 7825353 ~ 7826072 (+) | True | XLOC_003228 |
| TCONS_00008547 | lncRNA | downstream | 607839 | 7880142 ~ 7954546 (+) | False | XLOC_003229 |
| TCONS_00006349 | mRNA | upstream | 17470 | 7214353 ~ 7246987 (+) | False | XLOC_003221 |
| TCONS_00006345 | mRNA | upstream | 52360 | 7183025 ~ 7212097 (+) | False | XLOC_003220 |
| TCONS_00006355 | mRNA | downstream | 4521 | 7276824 ~ 7279558 (+) | False | XLOC_003223 |
| TCONS_00006356 | mRNA | downstream | 4680 | 7276983 ~ 7279664 (+) | False | XLOC_003223 |
| TCONS_00006357 | mRNA | downstream | 4722 | 7277025 ~ 7279416 (+) | False | XLOC_003223 |
| TCONS_00006358 | mRNA | downstream | 4729 | 7277032 ~ 7280259 (+) | False | XLOC_003223 |
| TCONS_00006359 | mRNA | downstream | 4767 | 7277070 ~ 7279537 (+) | True | XLOC_003223 |
| TCONS_00006343 | other | upstream | 113551 | 7150820 ~ 7150906 (+) | True | XLOC_003218 |
| TCONS_00006342 | other | upstream | 113817 | 7150547 ~ 7150640 (+) | True | XLOC_003217 |
| TCONS_00006341 | other | upstream | 114091 | 7150274 ~ 7150366 (+) | False | XLOC_003217 |
| TCONS_00006340 | other | upstream | 114375 | 7149989 ~ 7150082 (+) | False | XLOC_003217 |
| TCONS_00006329 | other | upstream | 402089 | 6862252 ~ 6862368 (+) | True | XLOC_003212 |
| TCONS_00006384 | other | downstream | 2626210 | 9898513 ~ 9898630 (+) | True | XLOC_003238 |
| TCONS_00006409 | other | downstream | 3995587 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006412 | other | downstream | 3999631 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006417 | other | downstream | 4073500 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006423 | other | downstream | 4100583 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
