RNA id: TCONS_00006358


Basic Information

Item Value
RNA id TCONS_00006358
length 1187
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_003223
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7276824 ~ 7280259 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTTGGTAAACAGTCGAGTCTACATGTAAAATATGTACAGTACTTTAGTAGcagatttgttttacagtgtaggttcgTCATACCACCATGAACACTGATGATTTTTAAAGAgcataatcattttgtttaaaattaagcTGGTGCTTCTCCAGACAGGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTTCCAGCAGAGCAGGCGCTACATAGAGCTTCATGAGCGATTGCAGGAGGAACGCGGCAATCTTGCACGGCGGAGAGACGAGTTGCGCGCGGCTGGAAAATCTTTGGAGAACAGTGTGATAGAGGTGAAAAGTAGCGCAATGTGACTTCCGAACATTCACAGCGCCATTTCATGAACTGGAGATTGACTTTAGTCGAGGATTGGGCATGGCACTTGTGAATGCATCAAAATAAAGCTTCAGATCCATAGAAGAATGCTGAGTGTTCTTCCTATTGGACATTGCATTTGTATACTAAAGTAGGAAGGTTTTAATCCAGATTTAATCGTCGCCAACTGTTTTAGTGTGTTGCATAGAAATGAAAGGCACAGGATTATAAAAACATGATTTTGGAATGCTGGTCTTTGTTAAGAAATCACTAGCATTTGGCTTTagcctcatcatcatcatttttttgctatttgctcatcatcatcatttttttgcTACTTTGTATGTGATGAATCTGTTTGgtgtattttgtgtgttcaaAATACAGTAAGTACAAAGATATTCAGGTTGTATTGTAAAAAAGTACCTGTCTGAATATACTGATTAGTCATTTGTTATTCACATCAtcattttaaatcatgtttaaaagcTTGTCCGTGCAGAAatcctttattttaaaataagtgtaAATGTGTAAAAGCCCAGTGCAccaggaaagtattcatagcgcttcactttttccacattttttattttacagccttattccaaaatggattaaagtcaataacccataatgacaatgtgaaaaaaagagcttttgcaaatttattaacaataaaaaacctgaaaaatca

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-81 Orthologous to human C19orf25 (chromosome 19 open reading frame 25).

Ensembl:

ensembl_id ENSDART00000161041

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006350 lncRNA upstream 57672 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008544 lncRNA upstream 125025 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008546 lncRNA downstream 980 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 440080 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 502255 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 545094 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 599883 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006351 mRNA upstream 2663 7261981 ~ 7274369 (+) False XLOC_003222
TCONS_00006354 mRNA upstream 4729 7264457 ~ 7272303 (+) True XLOC_003222
TCONS_00006352 mRNA upstream 4976 7262001 ~ 7272056 (+) False XLOC_003222
TCONS_00006349 mRNA upstream 30045 7214353 ~ 7246987 (+) False XLOC_003221
TCONS_00006348 mRNA upstream 65133 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006360 mRNA downstream 44445 7324704 ~ 7341807 (+) True XLOC_003225
TCONS_00006361 mRNA downstream 152274 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006362 mRNA downstream 248340 7528599 ~ 7736933 (+) False XLOC_003226
TCONS_00006364 mRNA downstream 299820 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006363 mRNA downstream 299820 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006353 other upstream 2654 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 126126 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 126392 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 126666 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 126950 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2618254 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3987631 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3991675 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4065544 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 4092627 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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